barSeed - Barley Seed Development Database

Probe CUST_21875_PI390587928

Source Contig U35_23682

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21875_PI390587928	Hv_44K_v2	GTTGCTCCCGTGCCCAAGCCGTCCAACTTCCAGAGCCATGCTGGCGAGTACACCCCCGAG	425	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57217.2	3339	2e-24	527 - 586	100	60 / 60	plus	None
MLOC	MLOC_57217.1	4866	2e-24	2999 - 3058	100	60 / 60	minus	ABC06258 ABC06261
JLOC1	JLOC1_37040.1	4724	8e-25	2801 - 2860	100	60 / 60	minus
JLOC1	JLOC1_37041.2	3280	8e-25	523 - 582	100	60 / 60	plus
Harvest35	U35_23682	485	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (485 bp)

>U35_23682 485 Hv_44K_v2
AACACGCCGCCTCTCTATCCCTCACGCGGATCTCCCTGCCGCGCCGGAACCCTAGCCGCC
GCCGCCCGCCCGCCCGCACGCCGCCGGTTCCGTCTCGCCGAGCTGCCGGGATGAGCAGCC
ACCGCAAGAACTTCCGGCGCCGCACGGACGACGACGACGGGGGCAAGGCGGAGGACGCCG
GACCCGCGAGCAGGCCCTCCTCTAAGGCCCAGCCCCCGCCCGCGCCTCCCAAGCCCAGGA
CGAGCCGCCTCAGCTTCGCCGACGAGGAGGAGGACGAGGACGACGCCGAGGAGGGGCCCT
TCGCGCAGCACCGGACCCGCCGCCCGTCCGCCTCGGTCAGCCAGGCGCGCACGGCCTCGC
CCGCCGCGGCTGCCCTCCACCGCGTCACGCCTGCCAGGGACCGGGTCAGGAGCTCGCCGG
CCGTGGTTGCTCCCGTGCCCAAGCCGTCCAACTTCCAGAGCCATGCTGGCGAGTACACCC
CCGAG

Homology of Contig U35_23682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None