barSeed - Barley Seed Development Database

Probe CUST_21873_PI390587928

Source Contig U35_23684

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21873_PI390587928	Hv_44K_v2	TGCTACCTGAGCTTGTATGGAACGTATGACAGCCCTTCCTGATACTGTTTAGAGGTTTTA	984	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360899	1639	6e-24	1487 - 1545	100	59 / 59	plus	None
MLOC	MLOC_34013.4	2097	6e-24	39 - 97	100	59 / 59	minus	None
MLOC	MLOC_34013.5	1881	6e-24	10 - 68	100	59 / 59	minus	None
MLOC	MLOC_34013.2	2100	6e-24	141 - 199	100	59 / 59	minus	None
MLOC	MLOC_34013.3	2094	6e-24	141 - 199	100	59 / 59	minus	None
MLOC	MLOC_34013.1	1723	6e-24	141 - 199	100	59 / 59	minus	None
JLOC1	JLOC1_21962.3	2249	3e-24	1907 - 1965	100	59 / 59	plus
JLOC1	JLOC1_21962.2	2564	3e-24	2222 - 2280	100	59 / 59	plus
JLOC1	JLOC1_21962.1	2243	3e-24	1901 - 1959	100	59 / 59	plus
Harvest35	U35_23684	1044	3e-25	985 - 1044	100	60 / 60	plus

Contig Sequence (1044 bp)

>U35_23684 1044 Hv_44K_v2
GAAAATGAAGATAGAAAAAAAGACGACAGACGTTCCAGCAGTGATGAGAAGGATGACGGC
GAAGCACAGCTGAAACAAATCGCACTGGATATGAAAGCATTGCATGAAGATAAATCTAAA
CTACAGATGATATTGGACAAGAAAATCGACGAAGCAGGCATAATTTCTGGCAGAGTAGAT
GATCTTGAATCACAGTTGAACAAAGAGAGAGAAGATTGTGAAAGGATGACCTCCAAAATA
AAGAAACTCATCAAAGCATATGGGCGTTATGTGAAAGCACAGGATGATTTAAAAAGGTCT
CAAGGACGTTTTGAGAGGTTGGCTGATTCGCTTGCTTCTGATTCCTTGAAATCTGGTACC
AAAGAACAAGAGTCCAGCGTGAATGCTGGTAATGACGACCCATATAATGCTTATGAAATG
AGCCCAGATGATCAGCGACAGAAGAATGGTTCAGCAGCTAGAAAAAGATCTGCTGCCCTT
TCAACAAGCGAAGAAGAAAAAACTGGGAAGAAAAGGAGAGTTAATGGTATTGATATGATC
CATGTGCCACGGAAATATTTACCAGAAGATGCTCTAGAGTCTCTTAAAAATAGCAAAGGA
ACTGAATCTCTGAAGAAATTTGGGGAAGATGACAATAATGACGAAATAAATGTCATTTCT
TCTGGCAATGATTTTACAGACAGGTACAATGGCAACGAGGAGGGTGATCCTGTGGACTTG
TAGACTGGTGGTGGGTGACAGATTTGAGCAGTAAAGGAGTTAGATTGAAACATTGAATGG
AGGAAAACCTGGGTCGCTTTGAAACTCAGTGCTTTTGCTATATCATATCCAGTTCTTTAT
ACATCGGGCGGTTGAAGCTCAGTTCAGCGCCCCCGTAGCTTTACTCTGCAGCGGTTAACT
TATATGAAGACATGTTATACTATTGCCGAAACATATTTTGCCTCATAGGGGAGTTCTCTT
CTTAATATCGCCGGACCTCGAAGCTGCTACCTGAGCTTGTATGGAACGTATGACAGCCCT
TCCTGATACTGTTTAGAGGTTTTA

Homology of Contig U35_23684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46890.1	373	3e-71	protein\|zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Brachypodium v1_2	Bradi1g32977.1	394	6e-98
Arabidopsis v10	None