barSeed - Barley Seed Development Database

Probe CUST_21866_PI390587928

Source Contig U35_35662

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21866_PI390587928	Hv_44K_v2	TGTAGGCTGAAAACCCCATGCTTGTATTTTGATGTGTTATGATGTTAATTACTTCTTGCC	381	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373696	1320	2e-24	1261 - 1320	100	60 / 60	plus	ABC07827 ABC08213
MLOC	MLOC_72881.1	1071	2e-24	246 - 305	100	60 / 60	minus	ABC07827
JLOC1	JLOC1_48501.1	925	8e-25	785 - 844	100	60 / 60	plus
Harvest35	U35_35662	441	3e-25	382 - 441	100	60 / 60	plus

Contig Sequence (441 bp)

>U35_35662 441 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTTTCATGAATGCTCGAGCGGCCGCTCACGTCGCGGTG
TTTGTAGCCGAGAATGAGTCGTCGGCGGGCAGGTATATTTGCTGCAGCCACAACACCACC
CTCGTGCAGCTCGCCCATCTCCTAGCCGAGAAGTACCCACGGTACAACGTGAAACCTGAA
CGATTTGCTGGGTCCCATGAGAAGCCGAGAGTGTGTTTATCGTCTCAGAAGCTCATCGGG
GAAGGGTTCGAGTTCAAGCGCAATGACCTAGGCGAGATCTTCGACGACCTCGTTGAGTAC
GGCAGGACCACGGGGATCCTTCAGCACTGATATATGTATGTTGGATGCAGATGGATATGT
AACTGGATCAAAACAATGCCGTGTAGGCTGAAAACCCCATGCTTGTATTTTGATGTGTTA
TGATGTTAATTACTTCTTGCC

Homology of Contig U35_35662 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None