barSeed - Barley Seed Development Database

Probe CUST_21849_PI390587928

Source Contig U35_23693

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21849_PI390587928	Hv_44K_v2	CCGACAACAAATCCTCACCCAATTTCGTTCTGATATTTTTTATGGCAACTTTAGTTGTAA	585	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59333.1	3927	2e-24	3712 - 3771	100	60 / 60	plus	ABC05572 ABC19896
JLOC1	JLOC1_38609.1	3799	8e-25	3533 - 3592	100	60 / 60	plus
Harvest21	ABC19896	733	3e-25	89 - 148	100	60 / 60	minus	ABC19896
Harvest35	U35_23693	733	3e-25	586 - 645	100	60 / 60	plus

Contig Sequence (733 bp)

>U35_23693 733 Hv_44K_v2
CAGCTCTGGCCCTTCGGCGAGCAGCTCAGAGCCAACTACGCCGAGACACAGAGCCTCCTC
CTAAAGGTTGCTGGGCACGACGACCTGCTGGAAAGTGACCCGTACCTGAGGCAGCGGCTG
ATGCTGCGGGACTCGTACATCACGGCGTTGAACGTGTGCCAGGCGTACACTCTGAAGAGG
ATCAGGGACGGCGAGTTCAGGCCGACGACGCGGCCGCCGCTGTCCACTGAGTTCATCGAC
GAGACGACGGAGAGCCTGATGGAGCTCAACCCCAGCAGCGAGTACGACCCCGGGCTGGAG
GACACGCTCATCCTCACCATGAAGGGAATCGCCGCGGGCATGCAGAACACGGGCTGATTC
TGGATTTTTTGGTGGACTTTCTCATGTTTCATGGATTTTTGTCAACTTTTTTTCCCCTTC
TGAATAGTAGAAGAGGATCAAAGGATATTCATCATACATGTGGCGGAATGTACACCCGAC
CACAAGATCCTGTGTGGCATATCGAGAAGGCAGGTCACGCGATCTTATGTGGACGAACAT
TAGAACTGTCCCTATGTTCGGACACAGCTACTACGCGTCACACGTCCGACAACAAATCCT
CACCCAATTTCGTTCTGATATTTTTTATGGCAACTTTAGTTGTAAAACATGACAACTTTT
TTGTTTTGGTTAACTATAGATGCCATGTTTAATTAATGATAGTTGCTATGTGGGTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_23693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g11054.4	535	1e-57	protein\|phosphoenolpyruvate carboxylase, putative, expressed
Brachypodium v1_2	Bradi2g06620.1	1007	5e-64
Arabidopsis v10	None