barSeed - Barley Seed Development Database

Probe CUST_21848_PI390587928

Source Contig U35_23694

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21848_PI390587928	Hv_44K_v2	CCCTCTGTGTACAAAGTCCACATCTAGAAAAGAAAATCATTTTTTCATTCAGTTGCTTTG	701	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14312.3	5668	2e-24	5599 - 5658	100	60 / 60	plus	ABC09063 ABC37110
MLOC	MLOC_14312.11	6597	2e-24	6532 - 6591	100	60 / 60	plus	ABC09063 ABC37110
Harvest21	ABC37110	354	3e-25	222 - 281	100	60 / 60	plus	ABC37110
Harvest35	U35_23694	834	3e-25	702 - 761	100	60 / 60	plus

Contig Sequence (834 bp)

>U35_23694 834 Hv_44K_v2
CCAAGAAATGCCAGTTACCGGAATGTGGATGACCTGGGACGCTCTGGTGATAGATCTAGA
GAAAGTTTACAGTTTGGAGTGGCCAGGAGGCCGAATTCATCTAATGGTTCTAGGCGAGAA
GTCTGAAGACAATGCATTGCTATCTTCATCTTTGCGTGTGCGTCACCTATTGAAAGATGT
ACACCCTTGGTGGGTTTTGTTAAGGAGAAGGAATTGCTATTGACACAACGAGAGGATTCC
TCGTGAAATGGGTAGGCGTTTGGATGGCATGTTGCAACAATAGGCCATTGACGGCAGGCC
AATCAGATCATCAGATGGCGCTCTGTTGGGCGGTTCAGATTATGGAACAAAGAAAGACTG
CCTCAGGTCCATAGTCTACTGCAATTGTGCAGAACACATTCGGTCTGATTATATAACTAG
ACTTCCACAAGGCTGCAGCTGGATGGTTTCTTTCTGGGATTGCAATACTTGCTTTAGTGC
TTAACAGGATACTGTCTTTCTCATAGATATAAATACATGCGCATGGGCATTTCCATTTTG
AGACATGCCAGTAGAGATAAATCTCACTGGCCCTAGAGCAGGTTAGGTTTCAAGCTTTAC
CGCAAGATTGCTGCTAGCTGCAAACATGCGTTGCTTGATATGCCCCTGTAGAATCAGTGT
TGCTAACATAGGCAGGGCTTCTGTAACATATGACATAAGCTCCCTCTGTGTACAAAGTCC
ACATCTAGAAAAGAAAATCATTTTTTCATTCAGTTGCTTTGTTATCTGTCAGTTATTTTG
AGATTGTTGAATGATTTTTTATGTTGTTGGATGAANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_23694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None