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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2181_PI390587928Hv_44K_v2TGTTTATTCAGAGTAGTCAATGTCGATGTTGTTTCAAAATCGTGGCATTTTCGCATCGAT693GeneList: white
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8921.2911.5831.4470.5690.728
Raw 12.28727.87629.63046.3524.4998.130



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37661112722e-24697 - 75610060 / 60plus None
MLOCAK251119.119672e-24755 - 81410060 / 60plus ABC38369
MLOCMLOC_77459.324722e-24554 - 61310060 / 60plus ABC38369
MLOCMLOC_77459.88982e-24315 - 37410060 / 60plus None
MLOCMLOC_77459.216452e-24352 - 41110060 / 60plus None
MLOCMLOC_77459.520922e-24351 - 41010060 / 60plus ABC38369
Harvest21ABC253837533e-25694 - 75310060 / 60plus
Harvest35U35_269727533e-25694 - 75310060 / 60plus



Contig Sequence (753 bp)

>U35_26972 753 Hv_44K_v2
GTGAGTTGAGGCGGCTCTCGCCGGCACGCAGCTCTTTACTCCCCGGGCTCTCGTCGCGCA
GCTCATTACTCCCATCTCGTCAGATGCATCTCCCACGCCCTCCAGTGCTCGCCCGCAACA
CTCACCCATGGCTAGGTTTTCGGCCGCCACCCCTTGATTCGTCGGGATCTTCCACATCCG
GCGATGGCGAGGCCAGAGGTGGCCGGATCTGGCACTGGTAAGCCCCTCCCCTCCTGCGCG
CAATTCTCCTCCCCATCTCACCTTCTCTTGTGTTCCCTTTTTGCAGGTCGCCATGGTTGT
GGACGGGATGACAACGATGGCAGGAGGGGCGAACCTCCGTGCGACGGGCCGCCTCCATGG
AGATGGAGCTCCTTCTCCATCGCGGCCAGCTCGACTTGCCTCGCCGCTCCATGGACTCAT
CTCGCCGCCGCTTGGAGTATCTGCTGCCGTCGCCGCCTATTGGCCCTCACCAGGAAGGAG
ATGCCAGATTGGTCCAGGCACGGCCGCGGCGGAGGAGTGCCACCGGCCAGCGTGTGCGGC
TCTACGTCCGTGGCACCATCCTCGGATAGAAAAGTTAGCATTATGTGTGATGAGTGCATG
GTGGCCTCCATGGAATGGCCTAAAATCACAAGCTACAGACTTCTAACTGAGAAGGGCACC
CCTGTACACGTTGGTATGATGAGATATCTTTTGTGTTTATTCAGAGTAGTCAATGTCGAT
GTTGTTTCAAAATCGTGGCATTTTCGCATCGAT



Homology of Contig U35_26972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None