- Probe CUST_21818_PI390587928
- Source Contig U35_47667
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21818_PI390587928 | Hv_44K_v2 | ACTCTATGTATTTTAGGAAAATGAGGAATAATTGTGGGGTCCGGTGTGGACCAGCAGGCT | 445 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.315 | 0.389 | 0.970 | 2.076 | 1.755 | 3.230 |
| Raw | 3.275 | 7.772 | 21.408 | 66.254 | 23.069 | 42.808 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5007.1 | 886 | 2e-24 | 768 - 827 | 100 | 60 / 60 | plus | ABC48930 |
| MLOC | MLOC_5006.1 | 615 | 3e-22 | 560 - 615 | 100 | 56 / 56 | plus | ABC48930 |
| Harvest21 | ABC48930 | 524 | 3e-25 | 446 - 505 | 100 | 60 / 60 | plus | ABC48930 |
| Harvest35 | U35_47667 | 524 | 3e-25 | 446 - 505 | 100 | 60 / 60 | plus |
Contig Sequence (524 bp)
>U35_47667 524 Hv_44K_v2 GATCCAGTAGAAAATGTTGGCGTCCAGGGAATTGCTGGTCTGAATTCTGAAGAAAACCTA GGCAGAGGAGAGATTAGACGGCGTGATGGTGCTGGGCCTCCTGGCCCGTGAGCAGGTCAG CGGGCATGGAGGCAGGGTTCGCCGACCTCGGTTGGATCACCGTCGGAGAAGCCCAAATCG AAGAAGTGGTGCACCGCTGCTCCGTCGACGCTGCTCCATCAAAACTACCTCCGACAGAAC GGCGAGCTTCTCGGATGACTGGATCTAAGAGGCGAGGAACTGGGAGAAAGAGCTTCTCAG GCGATTAGATCTGAGAGGGGCTGTTTTCTTAGAAAAGAATGGAGAGCAGGAGTGGGGTTA AAATATTGGGGTGGCAGGTTACAGGTTGTAGGTACTGTAGTAGTATTGGGGAGGCAGTGG AGTTAGATACAAGTTGACTATAATCACTCTATGTATTTTAGGAAAATGAGGAATAATTGT GGGGTCCGGTGTGGACCAGCAGGCTCGNNTCTAAAAAAAAAAAA
Homology of Contig U35_47667 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |