barSeed - Barley Seed Development Database

Probe CUST_2180_PI390587928

Source Contig U35_26973

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2180_PI390587928	Hv_44K_v2	GTAATGAAGATGGAAGCTATGGTTGCAGGCACACAATGAAAGATCATGTTGCAGAGGTTG	949	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251272.1	2122	2e-24	998 - 1057	100	60 / 60	plus	ABC06262 ABC14991
MLOC	MLOC_36756.1	553	6e-24	372 - 430	100	59 / 59	minus	None
JLOC1	JLOC1_23709.1	1379	8e-25	140 - 199	100	60 / 60	plus
Harvest21	ABC52111	499	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_26973	1075	3e-25	950 - 1009	100	60 / 60	plus

Contig Sequence (1075 bp)

>U35_26973 1075 Hv_44K_v2
CCAACGTTGCCGCCGCCGCCGCCGCCGCCGCCGGAGAACCCGCCCTCTGGAGGTGCAGCC
GCCCTCTCCGCCGCCATGATCTGCGCAATCTCCGGCGAGGTGCCGGAGGACCCGGTCCTG
TCGACCAAGTCGGGGCTGCTCTTCGAGCGGCGGCTCATCCAGCGCTACATCGAGGATCAC
GGGAAGTGCCCGGTCACCAAGGACGACCTCGCCATGGACGACCTCGTGACGGTGAAGACC
AACAAGATTCCTAAGCCTAGACCTCTGCAAGCTGCAAGTGTCCCTGGACTCCTTGGTATG
TTTCAGAATGAGTGGGATGCTCTCATGCTGTCTAATTTTGCTTTGGAGCAGCAGCTACAT
ACAGCAAGACAAGAACTCAGTCATGCGTTATACCAGCATGATGCTGCTTGCCGTGTTATC
TCCAGACTAAAGAAGGAAAGAGATGAGTCTCGGACACTTCTGGCCCAAGCTGAAAGGCAG
ATTCCTATTTCAGCTGCAGGACCTGCACCAGTAGCTGCTGTTACAAATGGGAAAAGAGCT
TTGGAAGATGAAGTGAGTCCTGATGGGAAGAAGATACGTCCTGGTATTAATCCTGTCATG
ATTGAGGAATTGACAGAATGCAATTCTATGCTCTCAGCACAGCGCAAGAAACGGCAGGTA
CCTCCAAGTTTAGCACCAATTGATGCACTTGAAAGATACACTCAAATCTCCAGTCATCCA
CTTCACAAAACAAACAAACCAGGGATCTTATCTATTGATATTCATCATTCAAAGGATATT
ATTGCTACTGGGGGCGTCGATACAAATGCCGTTCTTTTCGATAGGCCGTCGGGTCAAGTC
TTGTGCATTCTCACTGATCACTCAAAGAAGATTACCAGTTTGAAATTTGTTCTCCGCGAT
GACCTTTTGATAACGGGATCAGCAGATAAGACTGTCCGTCTATGGCAAGGTAATGAAGAT
GGAAGCTATGGTTGCAGGCACACAATGAAAGATCATGTTGCAGAGGTTGAAGCTGTCACG
GTCCATGCTAGTCAGAAGTATTTTGCAACTGCCTCCAGAGATAACACATGGTGCT

Homology of Contig U35_26973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32880.1	498	4e-174	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g75750.1	528	0.0
Arabidopsis v10	AT1G04510.1	523	5e-154	\| Symbols: MAC3A \| MOS4-associated complex 3A \| chr1:1226749-1230592 FORWARD LENGTH=523