barSeed - Barley Seed Development Database

Probe CUST_21809_PI390587928

Source Contig U35_47673

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21809_PI390587928	Hv_44K_v2	GAAATTCGTGAGGGCTTGAAAAGATGATGTATGCTTCGTTCGTACATGAAGTCAAATCAA	559	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.040	0.269	1.077	1.838	1.077	1.009
Raw	10.168	114.944	408.643	1097.805	214.490	220.622

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353957	1565	2e-24	1448 - 1507	100	60 / 60	plus	None
MLOC	MLOC_36976.1	1638	2e-24	1485 - 1544	100	60 / 60	plus	None
JLOC1	JLOC1_23882.1	1143	8e-25	1024 - 1083	100	60 / 60	plus
Harvest21	ABC48939	619	3e-25	560 - 619	100	60 / 60	plus
Harvest35	U35_47673	619	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_47673 619 Hv_44K_v2
GGGCCGTCGTGTTCGCCTCCTTCGGTAGCGAGACGTTCCTCCCGGCCGACGCCGCGACGG
AGCTACTCCTCGGCCTGGAGGCCACCAACCGGCCGTTCCTCGTCGTGCTCAACTTCCCCA
AGGGCACGGACACCACGGCGGAGCTGGCGAAGCGCACGCCGCCGGGGTTCGAGGAGAGGA
CCAAGGGCAGGGGCGTGGTGCACACGGGGTGGGTGCAGCAGCAGCACATCCTGCGGCACC
GCAGCGTGGGGTGCTTCGTGAACCACGCCGGGCTGAGCTCCGTCGTCGAGGGGCTCGTGG
CCGGCTGCCGGCTGGTGCTGCTGCCGATGAAGGGCGACCAGTACCTCAACGCGGCGCTGT
TCGCGCGTGACCTCCGCGTCGGGACGGAGGTGGCGCGGTGCGACGGCGACGGGTGGTTCG
GGCGCCGGGACGTGAACGACGCCGTGGAAACGGCAATGGCGGACGGATGGGAGGGTCAAG
GGACTAATAAATGGAGGGACTTCTTGGTGGACGACGCCGTGCAGAAGAGGTTGGCCGATG
ACTTCGTCACCGACTTTAAGAAATTCGTGAGGGCTTGAAAAGATGATGTATGCTTCGTTC
GTACATGAAGTCAAATCAA

Homology of Contig U35_47673 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g26950.1	480	7e-84	protein\|UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed
Brachypodium v1_2	Bradi1g33500.1	474	3e-82
Arabidopsis v10	None