barSeed - Barley Seed Development Database

Probe CUST_21808_PI390587928

Source Contig U35_47674

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21808_PI390587928	Hv_44K_v2	TAACTGGAAAGAGCTCATCCAAAGCATTAAAGCAAAGGGCATGCGGCCTGGTGTATCATT	315	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56085.2	964	2e-24	405 - 464	100	60 / 60	plus	ABC04371
MLOC	MLOC_56085.3	952	2e-24	326 - 385	100	60 / 60	plus	ABC04371
MLOC	MLOC_56085.4	429	2e-24	172 - 231	100	60 / 60	plus	ABC04371
MLOC	MLOC_56085.1	2769	2e-24	2151 - 2210	100	60 / 60	plus	ABC04371
JLOC1	JLOC1_36249.3	2420	8e-25	1516 - 1575	100	60 / 60	plus
JLOC1	JLOC1_36249.2	1506	8e-25	602 - 661	100	60 / 60	plus
JLOC1	JLOC1_36249.1	1416	8e-25	512 - 571	100	60 / 60	plus
Harvest21	ABC48942	673	3e-25	316 - 375	100	60 / 60	plus
Harvest21	ABC04371	1027	3e-25	402 - 461	100	60 / 60	plus	ABC04371
Harvest35	U35_47674	673	3e-25	316 - 375	100	60 / 60	plus
Harvest35	U35_34397	736	3e-25	579 - 638	100	60 / 60	minus
Harvest35	U35_1589	1027	3e-25	402 - 461	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_47674 673 Hv_44K_v2
CTACCGCCCAGCCCAGCGACCGCCGGTCCGGTCCTCCAATCGGAAGCAACCAAACCAAGC
ATGGCGGCGGCGGCGGCGGCGGCGGCGAAGATAGCGCCGTCCATGCTCTCGTCGGACTTC
GCCAACCTCGCCTCGGAGGCCGAGCGCATGGTCCGCCTCGGCGCCGACTGGCTCCACATG
GACGTCATGGATGGGCACTTTGTTCCTAATTTAACTATTGGAGCTCCAGTGATTGAGAGC
TTGAGGAAGCACACCAAAGGCATTTGGGAAAGCTGGTGCCTCAGGATTCACATTCCATAT
AGAAGTCACCAGAGATAACTGGAAAGAGCTCATCCAAAGCATTAAAGCAAAGGGCATGCG
GCCTGGTGTATCATTGAAGCCTGGTACTCCTGTGGAGGATGTTTTCCCTCTGGTCGAAGC
AGAAACCCCTGTAGAACTTGTTCTGGTGATGACGGTTGAGCCTGGCTTCGGTGGCCAGAA
GTTCATGCCGGAGATGATGGATAAGGTGCGCACGCTGAGGAAGAAGTACCCGTCCCTCGA
CATAGNAGGTGGACGGTGGCCTCGGTCCTTCCACAATCGACGTGGCCGNCGTCGGCCGGC
GCCAACTGCATCGTCGCCGGAAGCTCCGTGTTTGGAGCCGCCGACCCCGGGCAGGTCATC
TCGGCGCTGCGGA

Homology of Contig U35_47674 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32810.2	215	5e-64	protein\|ribulose-phosphate 3-epimerase, putative, expressed
Brachypodium v1_2	Bradi4g34610.1	226	1e-86
Arabidopsis v10	AT3G01850.1	225	2e-75	Aldolase-type TIM barrel family protein \| chr3:300428-301987 REVERSE LENGTH=225