- Probe CUST_21807_PI390587928
- Source Contig U35_47675
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21807_PI390587928 | Hv_44K_v2 | CATGCCGCCTTTTGGGGTTAAATAAGATAAGAGGATATGTTGAGAGCTGTGGTGACTTCT | 443 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.688 | 1.733 | 1.028 | 0.828 | 0.294 | 0.399 |
| Raw | 210.445 | 331.387 | 173.087 | 225.108 | 27.192 | 41.214 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358213 | 1868 | 2e-24 | 1737 - 1796 | 100 | 60 / 60 | plus | ABC40655 |
| MLOC | MLOC_18137.4 | 918 | 2e-24 | 175 - 234 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.5 | 1940 | 2e-24 | 175 - 234 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.6 | 1951 | 2e-24 | 175 - 234 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.10 | 1931 | 2e-24 | 142 - 201 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.1 | 2034 | 2e-24 | 201 - 260 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.2 | 2007 | 2e-24 | 201 - 260 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.7 | 2097 | 2e-24 | 162 - 221 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.9 | 2063 | 2e-24 | 143 - 202 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.8 | 2102 | 2e-24 | 162 - 221 | 100 | 60 / 60 | minus | ABC40655 |
| MLOC | MLOC_18137.3 | 2029 | 2e-24 | 201 - 260 | 100 | 60 / 60 | minus | ABC40655 |
| JLOC1 | JLOC1_12542.8 | 2117 | 8e-25 | 1807 - 1866 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12542.7 | 2085 | 8e-25 | 1775 - 1834 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12542.6 | 2051 | 8e-25 | 1741 - 1800 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12542.5 | 2029 | 8e-25 | 1719 - 1778 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12542.4 | 2013 | 8e-25 | 1703 - 1762 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12542.3 | 2128 | 8e-25 | 1818 - 1877 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12542.2 | 2002 | 8e-25 | 1692 - 1751 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12542.1 | 1999 | 8e-25 | 1689 - 1748 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48943 | 503 | 3e-25 | 444 - 503 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC40655 | 312 | 2e-22 | 156 - 210 | 100 | 55 / 55 | minus | ABC40655 |
| Harvest35 | U35_47675 | 503 | 3e-25 | 444 - 503 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_35742 | 321 | 3e-25 | 83 - 142 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43700 | 312 | 2e-22 | 156 - 210 | 100 | 55 / 55 | minus |
Contig Sequence (503 bp)
>U35_47675 503 Hv_44K_v2 GCTTAGTCCAGAGGGCAGACGAGGGATCCAACAGAGAACAAAGCGTGCTGCACAGCATGA GGAACCGTCGCCCCAAGCTGATGCTGCATCGGCATCGGCCTCTGCTCCTGCCATGGTTAT GCCTCCTGTTTTGCATCGGTGTGCTGGCACTCAGTCTAGTGGCCCGCAGTTTGTGCGCAA GCCATGGCGGCCCTTTTAGGATCGTCCCTTCGGGATTCGGCTATGGGTTATCCATCCGGT TGCCTGTGAGAGCCCCCCACCCTGGCCGGGGAATATTGGGGCGAGCGCCGGGCGATGTGA TTCAGTCAAATAGCGGAGTTCAGCTGGTGAAGCGAGGCCCGACGCCATCCCGAAAAACAT CTGCCGAAGAGGAGCAGGTGCAACACAATGAGCACAAGAGATGAAGGCCGGGCACGGTCT AGGAAGGGGTTTTAGCTTAGTGACATGCCGCCTTTTGGGGTTAAATAAGATAAGAGGATA TGTTGAGAGCTGTGGTGACTTCT
Homology of Contig U35_47675 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |