barSeed - Barley Seed Development Database

Probe CUST_21803_PI390587928

Source Contig U35_47679

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21803_PI390587928	Hv_44K_v2	TTGATGACGCTTCGATGTCCAATCTTCAAAAGCAGTTTGAGAAGGTTGCTGCAGAAGCAG	435	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.049	0.979	1.813	1.483	0.481	0.412
Raw	568.333	842.391	1328.770	1762.026	197.685	185.511

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370236	1904	2e-24	1281 - 1340	100	60 / 60	plus	ABC11492
MLOC	MLOC_71554.1	1633	2e-24	51 - 110	100	60 / 60	plus	ABC11492
JLOC1	JLOC1_47568.1	1775	8e-25	1196 - 1255	100	60 / 60	plus
Harvest21	ABC48949	556	3e-25	436 - 495	100	60 / 60	plus
Harvest21	ABC11492	1912	3e-25	1275 - 1334	100	60 / 60	plus	ABC11492
Harvest35	U35_47679	556	3e-25	436 - 495	100	60 / 60	plus
Harvest35	U35_18262	1953	3e-25	1275 - 1334	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_47679 556 Hv_44K_v2
GTGAAGAGGTGGAGAAGGGGAGTGTGGAAGAGAAGCTTGGGCAGGTTGGCCTGTTGTTTG
GATTCAGCAAGAGATTCCTGGATATTGGGGCGAATGCTGAGACCGTGCAGGGGAATCGGA
AGGTGGTGTTTGGGCTGAGGGATGCGTTCCTTAAGCTCGAAAAGGGATTGGAGCTGTCTG
GGGTTAAGATTTCTGAGCCAGAGTTTCAGGGCACTCAGCCACCAATGGTGGCAGTGGTAG
AAAATGGCATGGATTTGGATGAGGCAAAGGTGGAAAAGAAGAAGAAGAAGAAGAAAGACA
AGAAAAAGGAGAAAAAGGAAAAGAAGAAGAAGAAGAATAAGGTGGAGGATAGTGATGGAG
GGGATAGCAGTGAGCAGAGTATAGATGCCACATCAGAGGACCAGCAGATGGGCGATGACA
CTGATGCCATTACATTTGATGACGCTTCGATGTCCAATCTTCAAAAGCAGTTTGAGAAGG
TTGCTGCAGAAGCAGGGATGCCGGTGACACCAGTTACTGCANTAGTGGCAAAGAAGAGGA
AGCGCTCAAAATCTGC

Homology of Contig U35_47679 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None