barSeed - Barley Seed Development Database

Probe CUST_21801_PI390587928

Source Contig U35_47681

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21801_PI390587928	Hv_44K_v2	CTGTTGTGCAATACTTTAGGGACCGATACAAGTATGGATTGAGGTTCATTTCTTGGCCTT	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36970.4	1078	2e-24	554 - 613	100	60 / 60	plus	None
MLOC	MLOC_36970.1	1449	2e-24	925 - 984	100	60 / 60	plus	None
MLOC	MLOC_36970.3	2812	2e-24	909 - 968	100	60 / 60	plus	ABC17010
MLOC	MLOC_36970.2	2947	2e-24	915 - 974	100	60 / 60	plus	ABC17010
JLOC1	JLOC1_23875.1	2961	8e-25	927 - 986	100	60 / 60	plus
Harvest21	ABC48953	624	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_47681	624	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_47681 624 Hv_44K_v2
TGGATTTCTCCATCAAGCTGGGGAAAGCAGCAAGAGAAACCGAGTACAAGGTCACGATTC
GATTCGCTGCACGGGCAAACTTGTACCACCTGCAGCAGTTCCTCAGTGGGAGGCAAAGGG
ATTCTCCACAGGACACAATACAAGCGCTAGACGTTGTGCTGAGAGAGTCACCTTCTCTGA
ACTATGTCACCGCTTCTCGATCCTTCTACTCAAAACTATTTGGCCAACGTGACATCGGTG
ATGGGCTGGAGTGTTGGAGAGGATATTACCAAAGCTTGCGCCCCACTCAGATAGGCCTCT
CACTGAATATAGACATATCGTCGACGTCATTTTACAAGCCCATATCGGTGGTGCAATTTG
TTCAGGAGTGTCTGAATCTGAGGATTGTCGACCCCAATCAGCCCCTTTCTGACAGGGACC
GACTGAAGGTTAAGAAAGCATTGCGCGGGGTTCGTGTTGAAACCACTCACCAAGAGGGCA
AAAGGAGCGCCTACAAGATAACTGGGATTACTTCTGTCCCGCTGATTCAGCTCAACTTTC
CTCTGGATGATGGCAACCAAATGACTGTTGTGCAATACTTTAGGGACCGATACAAGTATG
GATTGAGGTTCATTTCTTGGCCTT

Homology of Contig U35_47681 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09020.1	1053	2e-92	protein\|argonaute, putative, expressed
Brachypodium v1_2	Bradi1g54977.1	1030	1e-106
Arabidopsis v10	AT1G48410.2	1050	5e-60	\| Symbols: AGO1 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr1:17886285-17891892 REVERSE LENGTH=1050