barSeed - Barley Seed Development Database

Probe CUST_217_PI390587928

Source Contig U35_33860

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_217_PI390587928	Hv_44K_v2	ATTATGAGTAAATTTGGGGCCTTTCCTTCCTTTGTAAGTACATGCATTGCTCCAGTCCCT	547	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250639.1	2190	2e-24	2102 - 2161	100	60 / 60	plus	ABC21325
MLOC	MLOC_64799.1	2311	2e-24	2229 - 2288	100	60 / 60	plus	ABC21325
JLOC1	JLOC1_42587.2	2583	8e-25	2380 - 2439	100	60 / 60	plus
JLOC1	JLOC1_42587.1	2429	8e-25	2226 - 2285	100	60 / 60	plus
Harvest35	U35_33860	623	3e-25	548 - 607	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_33860 623 Hv_44K_v2
CTTGGACTACTCGATAACCTAAATCATCCCGTGAAGAATTCGACAAAAGCAAAAGGGATA
AACAGAGAATCAAGCGGCCTCGCTGCAGCCTTAATACCAAGAATTGAAATGACAAAGGAA
GTCCCTGAAACGACAAAGTTGCATCCAACAATGACAAAGTACTGAACCTACGATGCCTAA
ATAAATGGTAAGCACACCCAACTAAAAGGGAGGCAGAGATGGGGGAAAGCGGACATGCAT
CCACTGCTTTTCATAAGCCGATACATGTGCCAGCGGCCGCTGGCAAGCGGCAGTGCGGAA
CGCCCACCGCTCCTCCAGCTGAGAAATCGAGGGGCGCGAGCATCGTGAGCCGGATAAACT
CCAAGGTCGAACGGATCGAAGCGTGGAGGTAGAAACCCCGGTGCCACTGCCGTTGTTGTT
GTGTAATAGATGACTGACCCAGTGTTGTTTCCTTGCACATTTTGAATTTTCGACGCGCTT
ATCATTTTGTGTTTGGATCATCATCATGTTTATTTGAGCCTGCCTTCACTAACTTATATG
TATCTTGATTATGAGTAAATTTGGGGCCTTTCCTTCCTTTGTAAGTACATGCATTGCTCC
AGTCCCTGGACTGAGAAGTTTCT

Homology of Contig U35_33860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None