- Probe CUST_21788_PI390587928
- Source Contig U35_47698
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21788_PI390587928 | Hv_44K_v2 | GAGTGTTTCCATGTAACGTCTTCTCGCATCCGGAGCTCTGGACTTTGTACCTTTAAAAAA | 512 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.697 | 6.435 | 2.352 | 0.813 | 0.227 | 0.354 |
| Raw | 1620.015 | 4363.090 | 1370.097 | 781.015 | 72.252 | 127.072 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52923.1 | 726 | 9e-22 | 598 - 652 | 100 | 55 / 55 | plus | ABC48992 |
| JLOC1 | JLOC1_33950.1 | 967 | 5e-22 | 705 - 759 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC48992 | 583 | 3e-25 | 513 - 572 | 100 | 60 / 60 | plus | ABC48992 |
| Harvest35 | U35_47698 | 583 | 3e-25 | 513 - 572 | 100 | 60 / 60 | plus |
Contig Sequence (583 bp)
>U35_47698 583 Hv_44K_v2 CTTTTGCCGAACATCTCTTGGACGACAAGGTTGAAGAAGAGAAGACGATGAAGCCCTTCC CGCTGACCCTAGCTCTCCTGTCCCTCTTCCTCGTCGCCTCGTGTCAGGACCTCGCCGTGG CCGCAGATGGCGGGCAAGAGCAAGATGCGGGCGGAGATGTCGGCGCCAGCGCCGGCGCCG CTCCGGTTCCGGACGGCGTGTGCGAGGCCAAGTGCAAGAACCGGTGCTCGCAGAAGGTGG CCGGGCGGTGCATGGGGCTGTGCACGATGTGCTGCGGCAAGTGCGCCGGCTGCGTGCCGT CGGGGCCGCTGGCCAGCAAGGACGAGTGCCCCTGCTACCGCGACATGAAATCCCCCAAGA GCGGCCGCCCCAAATGCCCCTAGGAGTCGCTACCACGATTCGTTTCTTTTAGGTGAATGA ATGGGATGGTTGGAGATTCAGGGGTTCCCCTTGTTTGTGAGCTTGATTTGTTTGTTCGGC ATAAACAGCGTAGATCTGGTTTGAGTAGTGAGGAGTGTTTCCATGTAACGTCTTCTCGCA TCCGGAGCTCTGGACTTTGTACCTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_47698 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |