- Probe CUST_21787_PI390587928
- Source Contig U35_32685
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21787_PI390587928 | Hv_44K_v2 | AACGTTGTTGCATGAGCGGCTTCGGAATGTAGTGGTTGATGATTCACTTTATGATAGCGG | 29 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.210 | 1.567 | 1.187 | 0.702 | 0.319 | 0.259 |
| Raw | 57.761 | 61.290 | 43.185 | 40.069 | 5.239 | 4.249 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_32685 | 379 | 3e-25 | 30 - 89 | 100 | 60 / 60 | minus |
Contig Sequence (379 bp)
>U35_32685 379 Hv_44K_v2 TTGGGCCCTATAGCAGCATGCACGAGCGGCCGCTATCATAAAGTGAATCATCAACCACTA CATTCCGAAGCCGCTCATGCAACAACGTTTAAGTAAATCCTTCCGCCCTTATTTTCTTTA GTCTAGTTGTTGGAGGAAATGCGCCTTGAACACATTACGTATACTAGCTGAGCTTTGTCC CTAATCGTGACTATTTGTTATTCGTTTCGATCAATTTTCCCCCCAGCCGGCAATTTTTTT TTTTCTCAAAATCTAGGAAGCTCTGAAAAAAAAGTCATCATTATGAAAAGATACTAGCGC TACTAATAAGGGAAGCTACTTTTTTCTAAGAAAGGAATAAAGCAGAAAACTAAAGAAAGA GATCTTAAGTGGGTCCCGC
Homology of Contig U35_32685 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |