barSeed - Barley Seed Development Database

Probe CUST_21785_PI390587928

Source Contig U35_18394

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21785_PI390587928	Hv_44K_v2	GTGGTTGTTCATTGTACTTTAAACATCAGTACATCACAAATTCACGATGTTATAGTGCTC	1535	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364521	1284	2e-24	1065 - 1124	100	60 / 60	plus	ABC09476
MLOC	AK248370.1	2483	2e-24	2348 - 2407	100	60 / 60	plus	ABC09476
MLOC	MLOC_52932.1	530	2e-24	163 - 222	100	60 / 60	minus	ABC09476
JLOC1	JLOC1_33959.1	548	8e-25	181 - 240	100	60 / 60	minus
Harvest21	ABC09476	2125	3e-25	2025 - 2084	100	60 / 60	plus	ABC09476
Harvest35	U35_18394	1640	3e-25	1536 - 1595	100	60 / 60	plus

Contig Sequence (1640 bp)

>U35_18394 1640 Hv_44K_v2
GGAGGCGGTCCTCGACCAGTACAGCCGGTGCTACCCGACGGCCGGGGAGGCCGCGCTCAA
CAGGCCCTTCTGCATCGACTACGCATGGCGCAAGCAGGGGTGTGGGGATCTGCTCATGCT
CGCCAACCCGCTCCACCTCCGGCTGCTCTCCGAGGACTGCTCCGTTCGGGTGCTCGACGA
CTTCAAGTACCGGAGCATCGACGGCGACCTGGTCGGCGTCGTTGGCGACTCCTGGGTTCT
CAAGACCGACCCGTTGTCCCCAACATGGCATTCCACCCGGGGCGTCAACGACGACGGGGT
CGACGAGGTCGTGGCCGCGCTGCGCAAGGACGTTGACAGCCTGGCTTCCAGCCCCATCGC
CACCACCTCCTCCTACTTCTACGGGAAGGCCATTGCCAGGGCGGCGAGGCTGGCGCTGAT
CGCCGAGGAGGTCGGGTGCCCCGAAGTCATCCCCGCGGTGCATCGCTTCTTGAAGGCCAC
CGTCACGCCGTGGCTGGACGGCAGCTTCCAGGGGAATGGCTTCCTGTATGATCCCAAATG
GGGCGGCCTTGTCACCAAGCAGGGGCTGCAGGACTCCGGCGCAGACTTTGGCTTCGGGAT
CTACAACGATCACCACTACCATTTGGGCTACTTCCTGTATGCCATTGCTGTGCTTGCCAA
GATCGATCCATCCTGGGGAAGAAAGTTCATGTCTCAGGCCTACTCCATGGTTGCCGATTT
CATGACATTGTCCCGCAAGTGCGGTGCGAGCTACACCAGGCTGAGGACCTTCGATCTCTG
GAAGCTGCATTCCTGGGCCGGAGGACTGACGGAGTTCGGCGATGGGCGCAACCAGGAGAG
CACGAGCGAGGCTGTTAACGCTTACTACTCTGCTGCGCTCCTTGGACTGAGCTATGGGGA
CACACACCTCGTCTCTGTCGGTGCGACGCTTACCGCGTTTGAGATGCTGGCGGCGCAGAC
ATGGTGGCATGTCCGGGAAGGAGAAGGGATCTACGAGGACGACTTCAGCAGCAACAACCG
GGTCGTCGGCGTCCTGTGGGCTAACAAGAGGGACAGTGGACTCTGGTTTGCGCCACCGGA
GTGGAAGGAATGCAGGCTGGGGATCCAGCTCCTGCCGCTCCTGCCGATCAGCGAGGCCCT
CTTCCCAGACATTGGGTTTGTCAAGGACCTGGTGAGCTGGACCACGCCAGCCTTGGCGAG
GGACGGTGTCGGAGAAGGGTGGAAGGGCTTCGTGTACGCGCTGGAGGGGGTCTACGACAA
GGAGTCGGCATTGGCCAAGACCAGGGCGCTGGCATCACACGACGACGGTAACACGCTGAC
GAACCTTCTGTGGTGGCTCCATAGCCGTGGCAATGTCGACAACACGGTTGTTGGATCCGG
CAGGTGCTGCTGGTATCGCCAGTACGGCCATTGATGCCGCTGAGTATGAATTGCTGGGGA
GGTGGAATGCTCTTCAGGTATGTCATGTGTACCTGCAAGTGAAAATGCCCGGGTTTCAGA
TTGTGAGTGTTGCTGGTTCGGTGTAAGATACAGGAGTGGTTGTTCATTGTACTTTAAACA
TCAGTACATCACAAATTCACGATGTTATAGTGCTCTTCTTATATATATTTGAATAATTAA
ATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18394 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g21210.1	741	protein\|beta-glucan-binding protein 4, putative, expressed
Brachypodium v1_2	Bradi4g29390.1	686
Arabidopsis v10	AT5G15870.1	745	glycosyl hydrolase family 81 protein \| chr5:5182641-5184878 REVERSE LENGTH=745