barSeed - Barley Seed Development Database

Probe CUST_21780_PI390587928

Source Contig U35_18397

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21780_PI390587928	Hv_44K_v2	CATTGGATGTAGTCATGCATACTTGCTGTTCCCCCCTGGATGACAGAAGTAATTCTCACT	655	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58960.1	1608	2e-24	1507 - 1566	100	60 / 60	plus	ABC01453 ABC01454 ABC29249 ABC34632 ABC39063
JLOC1	JLOC1_38335.2	1604	8e-25	1480 - 1539	100	60 / 60	plus
Harvest21	ABC01454	1530	3e-25	1455 - 1514	100	60 / 60	plus	ABC01454
Harvest35	U35_18397	731	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_18397 731 Hv_44K_v2
ATCAAGAAGGGAATCGAGGCTGATGGCATGGAAGCACTGTACAAGAAGGTTCATGCTGCC
ATTCGTGCTGATCCTACAATAGCAAAATCAACCAAGGAACCACCAAAGACGCACAAGAGG
TACAATCCCAAGAAGCTGACCTACGAGCAGAGGAAGGCCAGTCTCGTAGAGCGGCTCAAT
GCCCTCAACTCATCTGGTGGTGCTGATGTCGATGAAGACGACGATGAATGAGAGTAATCG
ACCCTAGGCCCCTATAGTGCTGTCTTCATGCTTCCAAATGAACTTGCTCTATGGCATTAA
AGAGTAGTATATCGTGAGAGGCATTTTTGCTCAAGTTTTTAGCACTCCGCATGTTGTACC
TGCCCCCTTGGTTTTGAGTACCGTTCTGGAGTTCTGGATTATCTTAAATTATACTAGGTG
CTGGCATTTTGACATTGCTTCAAAAAAAAAAAAAAATCTGGATTTCTGTTGGTTGTGTCC
GCCCCTGTGGACTGGCTGGATATCAAGGCCCTGTTTGCCGTGCATGTGATGTTCTGCCAA
ATGTGTTAATTTATTCGGTTGTTAGCTTGTTTATGTTGATACATGCCTATCGTTTATACT
GTAGATGAACGTCACTAGTTGGTGCCTATTGCCCAGTTTCAGCTGTTGTTGGCATCATTG
GATGTAGTCATGCATACTTGCTGTTCCCCCCTGGATGACAGAAGTAATTCTCACTGCAGA
ATCCAGTCTAG

Homology of Contig U35_18397 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None