barSeed - Barley Seed Development Database

Probe CUST_21778_PI390587928

Source Contig U35_18398

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21778_PI390587928	Hv_44K_v2	GTAATCAAGCAATCAAGCGGGTTGGCCATATATATTATTTGTTCAAACATTTATGGAGCA	936	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.969	2.586	1.159	0.731	0.381	0.426
Raw	547.429	758.680	294.049	300.610	52.833	65.694

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55071.4	4149	2e-24	2984 - 3043	100	60 / 60	plus	ABC10142 ABC15138
MLOC	MLOC_55071.2	3530	2e-24	2622 - 2681	100	60 / 60	plus	ABC10142 ABC15138
MLOC	MLOC_55071.3	3435	2e-24	2625 - 2684	100	60 / 60	plus	ABC10142 ABC15138
JLOC1	JLOC1_35495.1	4123	8e-25	1107 - 1166	100	60 / 60	minus
JLOC1	JLOC1_35494.3	3502	8e-25	2603 - 2662	100	60 / 60	plus
JLOC1	JLOC1_35494.2	3528	8e-25	2629 - 2688	100	60 / 60	plus
JLOC1	JLOC1_35494.1	3548	8e-25	2649 - 2708	100	60 / 60	plus
Harvest35	U35_18398	1012	3e-25	937 - 996	100	60 / 60	plus

Contig Sequence (1012 bp)

>U35_18398 1012 Hv_44K_v2
GGGCGCTGCCCAAGTGGCCCCAGAGGCTGGGCGTCGCGCCGGAGCGCGTCTCCGTCGTCC
CCGGCGGCAGCGGCAGCGCCATGAAGCACGACGACGGCAAGTGGAAGGCGGCCACCAAGC
ACTACAAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTCATGGACATGA
GCACCGTCTACGGCGGGTTCGCGGCGAGCCTCGTCAAGGACCCCGTGTGGGTCATGAACG
TCGTCTCCTCCTACGGGCCCAACTCCCTCGGCGTCGTCTACGACAGAGGGCTCATCGGCA
CTAACCACGACTGGTGCGAGGCCTTCTCCACGTACCCACGTACGTACGACCTGCTGCACG
CCGACGGCCTGTTCACCGCAGAATCGCACAGATGCGAGATGAAGTTTGTGCTTGTTGAGA
TGGACCGCATCCTTCGCCCGACCGGCTACGCCATCATCCGGGACAACCCATACTTCCTCG
ACTCCGTGGCCTCCATCGCCAAGGGGATGAGATGGACCTGCGACAGGCATGACACCGAGA
ACAAGGAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAAGCAGCTCTGGTCGGCAAAGA
AGGCATAGATACGATACGAACCAGCAGTCGCGGTGACAAGAATTGGCCATGATCCCAATG
GAAAGGCGAGGGTGATTCATAGTCAGCAATTTGATAGAACAAGAGGGTTCATAGTCATCA
AAATAAATTACATGAGTAATATATATATAGTTTATATCTTATCATATACTGTATTCATAT
AGGAGGATCCAATAGTTAGCTATTGATCACACAACAGTTGATTCTTTTTCTTTGCCGAAA
AACCGGGGGAGGTAAAAGTTTGGTGAGGCACCGGTAAGCCGCAAGTTGTTATCCAAATAC
TGTATGCATGTCCTATAGCTAGTCAGTACTGTGATTGTAATCAAGCAATCAAGCGGGTTG
GCCATATATATTATTTGTTCAAACATTTATGGAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g14150.1	224	2e-119	protein\|dehydration response related protein, putative, expressed
Brachypodium v1_2	Bradi3g21597.1	583	1e-125
Arabidopsis v10	AT1G31850.1	603	7e-95	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:11431165-11433443 FORWARD LENGTH=603