- Probe CUST_21768_PI390587928
- Source Contig U35_44673
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21768_PI390587928 | Hv_44K_v2 | GATGCACAACGGCAACAAGGAGGACCGGCGGTCCGTGACGGAGCTGGGCGTGGTGGCGCG | 243 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.338 | 0.451 | 0.936 | 1.591 | 1.393 | 1.452 |
| Raw | 3.130 | 9.321 | 19.264 | 46.780 | 16.041 | 17.926 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK377068 | 888 | 7e-23 | 401 - 460 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_81739.1 | 921 | 7e-23 | 657 - 716 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_54374.1 | 675 | 4e-23 | 414 - 473 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC42670 | 303 | 3e-25 | 244 - 303 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_44673 | 303 | 3e-25 | 244 - 303 | 100 | 60 / 60 | plus |
Contig Sequence (303 bp)
>U35_44673 303 Hv_44K_v2 GGTGGTCGAGGCAGATGAGTTCGATCCTACTGAGGACGAGCTGGTGCTGCTCTTCCTGCG GCCGCAGCTGCGCGGGTTCCCGCCGCGGGTGGCGGGGGCGGTGGTGGAGGCGGACCCGTG CGCGTCGCCGTCCTGGGAGCTGCTGGAGCGGCACGGACTGCTGCGGCGCGGGCACGGCTA CTTCTTCGCTGCGCGGCGGCGCGGGAAGGTGCGGCGCACCCCGGAGGGCGGCCGCGGCGC GTGGATGCACAACGGCAACAAGGAGGACCGGCGGTCCGTGACGGAGCTGGGCGTGGTGGC GCG
Homology of Contig U35_44673 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |