- Probe CUST_21765_PI390587928
- Source Contig U35_44683
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21765_PI390587928 | Hv_44K_v2 | AACGGGCACCTTGGTTGTGGTGAAGTTGAAGATTTAAAAGTCGAAATGTTACCTAAAAAA | 10 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.807 | 1.880 | 1.988 | 1.125 | 0.409 | 0.437 |
| Raw | 1658.178 | 5921.313 | 5477.527 | 4783.147 | 628.709 | 721.971 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37402.7 | 4706 | 9e-22 | 4646 - 4700 | 100 | 55 / 55 | plus | ABC10753 ABC29439 ABC42694 |
| JLOC1 | JLOC1_24220.2 | 4873 | 5e-22 | 4659 - 4713 | 100 | 55 / 55 | plus | |
| JLOC1 | JLOC1_24220.1 | 4866 | 5e-22 | 4652 - 4706 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC42694 | 288 | 3e-25 | 11 - 70 | 100 | 60 / 60 | minus | ABC42694 |
| Harvest35 | U35_44683 | 288 | 3e-25 | 11 - 70 | 100 | 60 / 60 | minus |
Contig Sequence (288 bp)
>U35_44683 288 Hv_44K_v2 TTTTTTTTTTTTTTTTAGGTAACATTTCGACTTTTAAATCTTCAACTTCACCACAACCAA GGTGCCCGTTAGATGCCCTGCTACTGGACTGACTGACTGCTACCAAAGTCTGGACTGGAA CATCGTAAATTCATTTCCAGAACAACAGAGCTCTCTCTTCCAACTGAACCCACTTCGAGT CTTTTTTTTTCTAAAATGGTTACCTAGATCGAGCTGCCTATGTACATTCCCTCCTTTGGA AAGAACCAACAATATGGCTATGCAACTAGCAAAATGAAATCTGCCTTC
Homology of Contig U35_44683 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |