barSeed - Barley Seed Development Database

Probe CUST_21752_PI390587928

Source Contig U35_44699

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21752_PI390587928	Hv_44K_v2	TCTATCCACTGAAACTAGTAGAGTTCATCGTGGTCTTGAATGATGGCAACCTTATGCAAA	13	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.143	1.373	1.118	1.014	0.487	0.466
Raw	1102.828	2066.705	1462.753	2035.771	356.193	368.592

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_34942.2	1312	1e-23	1169 - 1226	100	58 / 58	plus
JLOC1	JLOC1_34942.1	1586	1e-23	1443 - 1500	100	58 / 58	plus
Harvest21	ABC42729	538	3e-25	14 - 73	100	60 / 60	minus	ABC42729
Harvest21	ABC08657	1167	4e-24	1050 - 1107	100	58 / 58	plus	ABC08657
Harvest35	U35_44699	538	3e-25	14 - 73	100	60 / 60	minus
Harvest35	U35_3946	1167	4e-24	1050 - 1107	100	58 / 58	plus

Contig Sequence (538 bp)

>U35_44699 538 Hv_44K_v2
TTTTTTTTTTTTTTTTGCATAAGGTTGCCATCATTCAAGACCACGATGAACTCTACTAGT
TTCAGTGGATAGAGCAGGTTCAACAACAAAGTTGACAAAGTTTCACCTTGGCATGATCAG
TGAGAAGGTAAACGTCATACATCACCATTATTTCCAGGGTAAATACTGAATAATCTGAAA
GCACATTGTTTTCACAAGTTACATGTGCGATAGGTACATCATGCATCGATGATCTGAATA
ATCTGAATAATCTGAATAATCTGAATAATCTGAATGTCACATTTGACAAGATGCATCGAT
GATCCAGCATGATTTTTTTGAGCTGAGCTTCTTCAATCAGTGTGAATTCCACCCATGAAG
GTCCTTGGGTCAAGGCAGGTACCACTGAACTGAGCCTGCGAGAAGTCAAACCCAGGATTC
TCTTCTTGAAACCTTTGCAGCATAAGCCGTTTCTGTTCCTGGTCTGCAGCATATGGATCT
AAGCTACCTTGGCCTTTTATTGGAGATGCCCATGTTTTCCCCTTTTCCCTTTTTTGCA

Homology of Contig U35_44699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None