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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2174_PI390587928Hv_44K_v2ATGATGACACATACAGCCCCAAGTATCCAAAAAGTGTGAACAGGTCAAGATCAAGTTCCT625GeneList: cyan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6211.1941.1300.7060.4310.403
Raw 223.561230.114210.635191.79144.91045.608



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_23395.119802e-2432 - 9110060 / 60minus None
MLOCAK37588631793e-211743 - 18029758 / 60plus ABC25813
MLOCMLOC_78180.320133e-21205 - 2649758 / 60minus None
MLOCMLOC_78180.125443e-21739 - 7989758 / 60minus None
MLOCMLOC_78180.226833e-21878 - 9379758 / 60minus None
JLOC1JLOC1_16169.119758e-251884 - 194310060 / 60plus
JLOC1JLOC1_52109.127892e-211748 - 18079758 / 60plus
Harvest35U35_389526883e-25626 - 68510060 / 60plus



Contig Sequence (688 bp)

>U35_38952 688 Hv_44K_v2
GGGCGAACTGGAAAAACTGCTGAGAGCCGTTCTAGAAGCTCNTACAGGGAGAAACGGCTG
AATGGCATGGCTAAAGTTGGGCCTCAGAAGATGCAGTTGTCAGAGAAGTTGCTGCCCAAG
ACACTGAATGAGGGTGAAGATAAGCTCTCTTCGCAGAGAATTTCATCAAAGAGCAAGGAA
AATTATTCTTCAGTGCCGCACCGGAAGGAGAATTCTAATTTGAGCAAAGCTTCAGTCAGA
AGCCCTCAGGCACATAAACCAGTGGGAAATAATTTGAAGTCGCCACCATCTGGTGCTGCA
GCTGCCAGTCCATCACCTGAACCGAAAATGTACCCACGGGGCAATGAGGCAAGTCCCCAG
ATAAATGGTAAACCATCTGGCGCTGCTAGTCCATCACCTGAACCGAAAATGTACCCATGG
GACAATGAGGCAAGTCCCCAGATAAATGGTAAACCATCTGGTGCTGCTAGTCCATCACCT
GAAGCAAAAATGTACCCATGGGACAATGAGGCAAGTCCCCAGATAAATGGTAAACTTGGA
GAGAAGTTTGCCAGTCCATTGGCAGACAGATTCAGAGACATGGGAGATCACTTTGCAAGT
CCTACTTTTGCGACTAAAGTGCTACATGATGACACATACAGCCCCAAGTATCCAAAAAGT
GTGAACAGGTCAAGATCAAGTTCCTATG



Homology of Contig U35_38952 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None