barSeed - Barley Seed Development Database

Probe CUST_21749_PI390587928

Source Contig U35_3602

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21749_PI390587928	Hv_44K_v2	CATAGGGAGCAACTGTGCACTTGATAAGCACAGGAACCAACCAAATGTTATGGCAAAAAA	2228	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.122	1.746	1.095	0.844	0.303	0.358
Raw	2600.100	3348.586	1833.713	2201.264	281.101	359.905

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38714.2	6554	6e-21	6396 - 6451	98	55 / 56	plus
JLOC1	JLOC1_38714.1	5808	6e-21	5650 - 5705	98	55 / 56	plus
Harvest21	ABC09195	2299	3e-25	2229 - 2288	100	60 / 60	plus	ABC09195
Harvest35	U35_3602	2299	3e-25	2229 - 2288	100	60 / 60	plus

Contig Sequence (2299 bp)

>U35_3602 2299 Hv_44K_v2
GTAAAATGCAGGCATTTGATGCTTTAGTAGCTTCCCTCGACACTCGTGGCATCCGGGAGT
CACATTTGCATTCAATGTTGCGAAGCATCGAGCCAACCTTTAAGGATGCTATAGGGAGGA
AAAATGATGCTACTATAGAACACCCAGCTGGAAGGAATTTGAGAAATGGAAGTAGTGAAA
TAATTAGCCCAAATCATAGTAACGAATTTGGAAGTCCATGCAGCACCCTTTCAGGTGTCG
TTTCTGATACTGCAGTGGCATACTCGGATTCTTTCAAGATAGAGCTTGGGCGTAATGATC
TGGAGAAGGTTGGTATTTCCAAGAGGGCATGTATGTTTCTGAAGTGGATGTGGGAGTGCA
ACAATCATCAATCCACATGTGCCATGAAATATGGAAAGAAACGGTGTTCTGAGTTGATAC
AGTGTTGTGATTATTGCTACCAGATTTATTTAACTGAAGAAATGCACTGTTCGTCTTGCC
ACAAGACATTCAAATCCATTCAGAGTCTCTCGGAACATACAACACAATGTGAGGAGAAAA
GGAGAACAGATCCTAATTGGAAGATACAAATATCGGATGATTCTGTTCCCATAAGATTGA
GATTGCTGAAGGTGCTGCTAGCTACCATTGAGGCCTCAGTTCCAGCAGAAGCTCTCCAAC
CATTTTGGACCAATGGATATCGGAAATCATGGGGTGTAAAGTTGTTTTCTACAACATCTA
ACGAAGAAGCCTTTCAGCTGTTAACTGTGCTGGAAGGTGCACTAAAAAGGGATTACTTGT
CATCTAACTTTGAAACAACTGCCGAATTGCTTAATTCAGACACCCAAGATTTTGCTGACC
GGAGTTCTATTGCATGTTCTGGATCTGCTGCTGTACTTCCATGGGTACCCAGCACTGCTG
CTGCTGTTACCTTACGGTTGTTAGACCTTGATTCTTCCCTGTCGTACACACCTGATCAAA
AGGCAGGATTAAATAAAGAGCGAGAAGCGGGTGATTTCATTAAGGGTCCATCAAGATACA
CTGCTGTTAAGAACAGACAAGAAATGGAACATGTGGGAGCTCCTGGTTTTGATCATCATG
ATGGAGTGCAGCTGATTCCCAGCAATGGCCTTAGAGGCCGTGGACGAGGAGGTCGAGGAC
GTGGCAGGGGAGGTAGATCCCTCAGTCGTGGTGGCAGGGTCCCAAGAGGTGTTGGCAGCT
CTCCCAAGATTGAGTTCAGAGATGACAACAATGTGTCTTATAAGGAAGCCACAGATAAGC
AGGCTGGGCGAGGGCGAGGGCGTGGTCGCGGCCGAGGGCGCGGGCGTGGGCGAGGGCGTG
GACGTGGAAGTGTCAGTGGAAGTGTCAGTGGCAGCGGCAGTGTCCGAGGTCGTGGAAGAG
GACGAGGACGAGGACTTCGAACTGTTAGACCTAGGCAGCCAGTTGAGCTTGGAGCCAGAT
CAATTCCAAAGGCAAACTTGTTGGGAACCTTTGGCATGTTAAGTAATGCAAAGCCTACAG
CCGTGCATTCTCCACAGAGCTCTGGTGCTGAAGAGTGGGGCTTGGATAGACGGGTGTATG
CCGAGGATGATGAGAACAGCTCAGTTTCTCAATCAGATGAATCAGAAGGGGACGAAGAAA
ATGGTGAGCCCATGAACGAGGACTATGATGAGCAGCTTCCAGATTATTCAAGGCACAATT
CTGGATCCAGCCCCCTTCAGATGATGGATTCTGAGTCTGAAGATAATGATGAATATGATG
AGGAGGGCGAGGATGATGGGGCTGACTATGATGCAGAGCAACCTATGGACGAAGACAACG
ATGATGCTGAGATGAGTGGGGATGACGAACTCGGTGATGATGATGATGATGACGGCGACG
ATGATGATGGTGGTGGTAGTCAGGGCGGAGCGGGGAACGCCGACGATGATGATGCAACAT
CCTATTCTTCTGAGTACAGTGAATAAGAGATGTCAGGAAGAAACCTGGTCAGGCTGGAGT
GATGATGACTGATCTACAGTTTTGCCTTAAGTCTAGGCCCAAATTCTGAACGAAGGAAGT
ATCGAAGAGGATGAAATAGGTTTATATTTGATTGTTGGGGCGCAAATTTGTTTGCTCCCG
CTGGACTTGAGCTTTGTACATATTTCTGTTAGTTGTTTACAGATTAGATGTTCCCAGTGT
ATACAAGATTACCGTCGGTTACAGAAGCTACACTTTCTGCTTCATTCCTGTTACCGTTCA
TCTCGTTGCATAGGGAGCAACTGTGCACTTGATAAGCACAGGAACCAACCAAATGTTATG
GCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48820.1	1856	7e-166	protein\|DDT, putative, expressed
Brachypodium v1_2	Bradi2g16647.1	1803	0.0
Arabidopsis v10	AT5G44180.1	1694	2e-57	Homeodomain-like transcriptional regulator \| chr5:17783172-17789872 FORWARD LENGTH=1694