barSeed - Barley Seed Development Database

Probe CUST_21744_PI390587928

Source Contig U35_3607

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21744_PI390587928	Hv_44K_v2	CCACTTTCGAAAAAGTTTCACCCCGCTTTGTATTATAAAGTAACCAACCAATACAACTAA	480	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.207	0.253	0.951	1.803	1.420	1.079
Raw	89.561	171.718	557.445	1531.059	470.485	389.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_29630.1	638	8e-25	566 - 625	100	60 / 60	plus
Harvest21	ABC08170	555	3e-25	481 - 540	100	60 / 60	plus	ABC08170
Harvest35	U35_3607	555	3e-25	481 - 540	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_3607 555 Hv_44K_v2
TCCCGGGCTAGACAGCATCCAGAGCAACAGTTTTCTAACCTCCCGTCTGATTCGTGTGTT
TTCCGATCGGTTGCCAATGGCGGACATAGCGATGCTGGTGGCCGACGAGGCGTTCGAGAG
GAGGCTGCAGCGAGGGTCGCCCTTCGCCGGCGCCGGCGAGGAGGCGTCCAAGGGCAGGGA
GAACTTCGGGGCCGTGAACAAGGTGTGGGCCTCATGGGCGTCGGGGGTCAAGGTGCGCGT
CGCGCTGCTCGTCGAGGCCGACGTGGCCGAGCCCAAGACCCCGGTCGCCATGGCAGCTTT
CGACGGCTTCTTCTCTGCTTGATTGGTTCTATTCTTCTTTCTCGTGAAAAAAATTGAGTT
CATTTGGAGGAGTTTTATCTCCACTCCTCCTCCCCTGAGTCAATGTCAGTTTGACTTGTC
ACTTGTACATAACCATGTGCTTTACTGATTTGCGACTAGAAAGTAGTATATATTTGTACT
CCACTTTCGAAAAAGTTTCACCCCGCTTTGTATTATAAAGTAACCAACCAATACAACTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_3607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None