barSeed - Barley Seed Development Database

Probe CUST_21742_PI390587928

Source Contig U35_3609

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21742_PI390587928	Hv_44K_v2	ACGTTGCTATTAAGCCTGGTCTTTTTTCCCCTCAATCAGTGAGTTAATTACCAGAAAAAA	1603	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.088	2.154	1.067	0.923	0.347	0.354
Raw	70.646	216.988	93.640	128.417	16.526	18.336

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61844.1	2120	2e-24	1713 - 1772	100	60 / 60	plus	ABC09368 ABC09369
JLOC1	JLOC1_40438.2	2285	8e-25	1467 - 1526	100	60 / 60	plus
JLOC1	JLOC1_40438.1	2518	8e-25	1700 - 1759	100	60 / 60	plus
Harvest21	ABC09368	1694	3e-25	1604 - 1663	100	60 / 60	plus	ABC09368
Harvest35	U35_3609	1694	3e-25	1604 - 1663	100	60 / 60	plus

Contig Sequence (1694 bp)

>U35_3609 1694 Hv_44K_v2
CCACACCCACACCAAATTGGGGCTGGGGGCTCCCCACCTTCATCACCCCCCAAAGTCCTC
CGTTAATCTTCCCTCGTCCCCGGTCCAAATTCCAAGCTCCAACACAAAAGGAGGCCAAAG
CCTCTCGAGTCTTCCTACCCCTCGCCGCGGTTCCACTTCCAGCCTTAAACTCCGCCCTTT
ATATTTTCTGCAGCGTCTTCTTGGTGGCGAGTCAAGAATCCCGCTGCTCTACCGACGCCG
CGGTTGGTTGTTGCCGGAGGTGGAGGAGGAGGTTGCGGCCGGCCGGCATACGATGACCGA
GGACGCCAGAGGGCGGGCGGTCAACCCGGCCTGCCCCAACGCCGCCAACCCCTTCCACCG
CTGCGCGGAGTACTGCCCCGTCGCCGCCCCGGCGGGCAAGTCCCCGGCGCAGAACGGGAC
AGGGACGCACGGCGACTGAGCGGGAGGGGCGAGGCAGCAGGCGGTCAACCCGGACTGCCC
CAACGCCGACAACCCCTTCCACCGCTGCGCCGACTACTGCCCCGTCGCGGCCCCGGCGGC
CAAGTCTCCCCCTCTGCCGCCGGGCCTCGGGGGCCAGAACGGGAGGACGCACAGCGACGG
CGACCTGCAGCCCAGGACGCGCCGCCGCGACAGGGCCGGCGGCTCCGGCTCCGGCGGCCT
CCCCCTCTACGTCTTCCTGCGTGAGGGCGCCTCGGACGGGGAAGGCAAGAAGGTGGATCC
CCGGTGCCCCAACGCGGCCAACCCCTTCCACGTCTGCACCAACCACTGCCTCGCCAAGAT
GGTCGAAGGCGGCCGCTCGTCGGAGGGCGGCAAGTCCCCCATTTCCCTCTTCTCCCGCCA
CTCCGGTCGCTCCACCTCCTCCTCCGAAGATGGCAGTGTCAAGTCCGGCGGCAGCAAGAA
GGCGGATCCGAAGTGCCCGAATGCCGGCAACCCTTTTCATGAATGTGGAGAGCATTGTGC
CATCAAGATGAAAGAGCTGGAGAAGCAGAAGAAGGCCGATAAGAAGTCGCCGCGCAAGAA
AGGTGGGAAGGATGGTGTGGTGGTGCAAAATTGGAAGGTTGATCCGAGGTGCCCAAATGC
GGGCAACCCATTCCATATATGCGCCCAGTACTGTTTCGATCATTTGAATGAAGCGGCATC
AACACCTACAAGCAAGCCAGACTCGAGAAAGGGAAAGGCTGTCATGAAAGCTGAGCCAAC
AGGAGAAACCAATCCTGATTGTGTCAATGCATCCAATCCTTACCACAAGTGTGGAGAATA
TTGCAAAAGAAATGGCAACAGATAGATGAGGCTGTCAAGATATGGTCTCTCCGGATGAAT
AGATGATGATGGTGAAAAATAAGTGATTCTCGCGACATTAGCCATTTCTAAGTTGCAGTA
AGTAGTAGCTGTGCCTTGTCCGGCTCATTTTGTAGTTTGGCTGCAGCGGCCCCGTCTTTC
GGGTGCTCGCGTGTATATTTTTCTTTACATCTATATACATATACATATTCTTCATGGTGT
TGTTCATGCAAGATCAACGAGTTTGCGTTGTTGCATATATAGGCCAGTGTCATGTATTGC
CAGAATGTTGCCAGAATGTATAGGGGTCATATTCTTTTGTAAGACGTTGCTATTAAGCCT
GGTCTTTTTTCCCCTCAATCAGTGAGTTAATTACCAGAAAAAAAAAGTGTCATGTGGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_3609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49700.2	301	6e-111	protein\|expressed protein
Brachypodium v1_2	Bradi1g34890.3	377	1e-130
Arabidopsis v10	None