barSeed - Barley Seed Development Database

Probe CUST_2172_PI390587928

Source Contig U35_38954

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2172_PI390587928	Hv_44K_v2	GCAGCAGGACCTCCCGGACTCCACCTTCACCATCGCCGAGCTCATCCAGAACTTCAAGCG	160	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64235.1	1657	2e-24	796 - 855	100	60 / 60	plus	ABC01862
JLOC1	JLOC1_42160.1	1499	8e-25	679 - 738	100	60 / 60	plus
Harvest21	ABC34940	220	3e-25	161 - 220	100	60 / 60	plus
Harvest21	ABC01862	1501	3e-25	637 - 696	100	60 / 60	plus	ABC01862
Harvest35	U35_38954	220	3e-25	161 - 220	100	60 / 60	plus
Harvest35	U35_13713	1501	3e-25	637 - 696	100	60 / 60	plus

Contig Sequence (220 bp)

>U35_38954 220 Hv_44K_v2
CACTGCACCACCACACTAACCAGCAGGCACTGCTCGCCCAGCTACTGCCGGCCACTCGAG
CGAGCAAGGCGCTGCTTCTGTCGGCGGCGGGTAGGTGGCGCCGTGCGTGCGTGCGTGCGT
GGGGCCGGCTGGACGGCGTGCACTCCCACGCGGCGGAGGCGCAGCAGGACCTCCCGGACT
CCACCTTCACCATCGCCGAGCTCATCCAGAACTTCAAGCG

Homology of Contig U35_38954 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None