barSeed - Barley Seed Development Database

Probe CUST_21729_PI390587928

Source Contig U35_3622

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21729_PI390587928	Hv_44K_v2	TGTGTCGTTTGCTACATGCCTACATAATTAGTTGTGGTTGCATTTGCTTGCGTCAAAAAA	1842	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.259	1.718	1.421	1.010	0.361	0.479
Raw	768.040	1659.224	1179.366	1313.353	165.221	236.610

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_4741.2	1803	5e-22	1712 - 1766	100	55 / 55	plus
JLOC1	JLOC1_4741.1	2036	5e-22	1945 - 1999	100	55 / 55	plus
Harvest35	U35_3622	1913	3e-25	1843 - 1902	100	60 / 60	plus

Contig Sequence (1913 bp)

>U35_3622 1913 Hv_44K_v2
GCTCGATCCGAGCCGCCTCCTGCCCGCACCCGGCATCTCTCTCTGCTCTCTGTTGTCCGC
CACCGCCGCCATGAGCACTGGCTGGAGGACGCTGCTGCTTCGCATCGGCGACAGGTGCCC
CGAGTACGGGGGAACAGCCGACCACAAGGAGCACATCGAAATCTGTTACAATGTGCTTTC
TCGTGAATATGAACACTCCAAAGATGATATTTTTGAGTTTCTCCTTCAGTGTGCCGAACA
ATTACCTCACAAGATTCCTTTCTTTGGAGTTTTGATAGGTTTGATAAATTTAGAAAATGA
AGACTTTGCCAAGGGTATCGTGGATGCAACACAGGCTATCCAAGGAACTTGTTAGCATGG
TTAGAGGAAGGAAGACTACACGTGATATTATTTTGTGGGTTGAGGAACAAATAGTTCCTG
CAAATGGGGCCAAATTCGCAGTTGATGTTGTTAGTCAGACACTTCTTGACATTGGTTCAA
AAAGTTTCACCCATCTTATCACTGTTTTGGAGAGATATGGTCAAATAATTTCCAAACTAT
GCCCAGATGAGGAAATGCAGCTATTGTTGATGGATGAAGTCAGTGCTTACTGGAAGAACA
GTACCCAGATGTCAGCTATAGCTATTGATAGAATGATGGGTTATCGCTTAATTTCCAACT
TGGCTATAGTCAAATGGGTTTTTTCTTCTGCTAATGTAGATCAATTTCATGTGTCGGATC
GTCCATGGGAGATTCTTAGGAATACTGTTAGTAAAACATACAATCGAATCAGTGATCTTC
GGAAGGAAATTCAGACACTGAGGAAAAGTATTCAAGTTGCTAAAGAGGCTAGTGCAAAAG
CCATCAAAGAGTTGGAGGAGGCTAAATCAACACTTGAAATTGTAGAGGGCCAACCTGTTC
CATCTGAAAGACCAGGCAGGCTGAGACGACTCCAAGGTTTTGCTGACAAAGCAAAAGAAG
AGGAAGTAACTATTGAAGAATCGTTAGAGGCAAAGGAGGCTCTCCTTGCCCGGGGGCTTG
AAGAAGGCAAAGAATTGCTTAGGTTATTATTCAAGAGCTTTGTTGATGTGCTTACTGAAC
GCCTGCCACCTGTTTCTGCTGATGGAGATGTTCCTAACCTACGTGCTGGAGATCCTAATG
TAACATTTCCAGTCAGCGATCCTGAAGCGGCAACTATGGAGATAGACAATGAAAATGGAG
CAGATAACAATAGTCAAGTGGATTGTGGAAATACAAAAGCTGGTTATAATATTGGAGAGC
TTGAGCAATGGTGCCTATGCACATTGGGGTATCTAAAGTCATTTTCTCGACAGTATGCAA
CAGAGATTTGGTCTCACATCGGCATGTTGGACGAGGAGGTTTTCGTCGGGAGTATTCACC
CTCTCATCTGGAAAGCTGCATTCTCCGGTTTGTGCAGACAGATGAACCAGTGAAGGGTTG
TAACTCGCCTTTGATTCCTCACCATCATGGTCTTGAAGACGACCTGTAAAAGCAAGCTGT
AATCACATTCTTGACTAATTCTGAGATGTCGCACCCAAGAATTTTCCTGTTTGGTAGTTC
TGACATGTTTGTCAGTGTATCTCAGTTTCATTTGCCTATGGTCACTCTTTGGGGTGAGTA
ATCTTGACGTGTATTTAGCTTTTAATTGCGAACTCTGCTGCTCCAGACTTAACAGGTGAG
CACCATTGGCTGTGCCTTTAGATTAAACACGTGTAGCGCCTGCAAAGCTATGGAGCGGGA
ACAAGTTTGAACAACGCCAGAGAGTTGCTATGTACTTGCTAGAAAAAATATTGGGTGGCG
ATTTGTGTAACCCCGGCAAATGAATTGCTGGAGTTCAATTAGTGTGTCGTTTGCTACATG
CCTACATAATTAGTTGTGGTTGCATTTGCTTGCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3622 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22570.2	868	0.0	protein\|MIF4G domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g62590.1	866	0.0
Arabidopsis v10	AT2G13540.1	848	2e-106	\| Symbols: ENS, ABH1, CBP80, ATCBP80 \| ARM repeat superfamily protein \| chr2:5637053-5642813 FORWARD LENGTH=848