barSeed - Barley Seed Development Database

Probe CUST_21727_PI390587928

Source Contig U35_3624

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21727_PI390587928	Hv_44K_v2	GTAGGAAACCTTATAATCCATCCTCCTAGTGCTTGTTACTCTTGTTATGTGAAATATGTT	1367	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.379	1.490	1.134	0.834	0.325	0.314
Raw	10191.917	17167.953	11522.063	13078.793	1824.740	1913.607

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54181.2	3876	8e-25	3600 - 3659	100	60 / 60	plus
JLOC1	JLOC1_54181.1	2731	8e-25	2455 - 2514	100	60 / 60	plus
Harvest21	ABC09010	1452	3e-25	1368 - 1427	100	60 / 60	plus	ABC09010
Harvest35	U35_3624	1462	3e-25	1368 - 1427	100	60 / 60	plus

Contig Sequence (1462 bp)

>U35_3624 1462 Hv_44K_v2
AACTCTTCGACATCTATCAACAGGGAAACATTGAAATTGATTGAGACTTTTGTGGACAAA
GCTGAAGACCTACCACACCTATGGGAAGCAGTTTGTTCCTCCAATGATGGATCCTATTCT
TGGTGATTATGCAAGAAATGTGCCTGATGCAAGGGAATCTGAAGTCCTGTCCCTGTTTGC
AACAATTATAAACAAGTTCAAAGCTGAAATGCTTGATGATGTGCCTCGTATATTCGAGGC
TGTTTTCCAGTGTACCCTTGAGATGATTACTAAAAACTTTGAAGATTATCCTGAGCACCG
CCTCAAGTTTTTCTCTTTACTTCGTGCTATCGGCACTCATTGCTTCAAAGCTTTAATTCA
GCTTTCCAGCCAGCAATTGAAGCTTGTGATTGATTCGATTAACTGGGCATTTAGACATAC
AGAGAGAAACATTGCCGAGACCGGCCTTAGTCTATTGTTGGAAATTCTGAAGAATTTTCA
GGCTTCAGAATTCACGAATCAGTTCTACAAGACATATTTTTTGAATATAGAGCAGGAGAT
TTTTGCAGTTCTCACAGATTCATTTCATAAACCTGGATTCAAACTTCATGTTTTGGTGCT
TCAACACTTGTTTTGCGTGGTTGACAGCCTAACTGAACCTCTATGGGATGCATCCACGGT
ATCATATCCATCTAATGCCTTGTTTGTACGGGACTACACAATCAAACTTCTTGGGGCATC
ATTTCCTAACATGACGGTAGCTGAGGTGACCAAGTTTGTTGATGGGCTCCTTGGTTCGAG
ACATGACCTCCCAAGCTTCAAAAACCATATTAGGGACTTCCTGGTGCAATCAAAGGAGTT
CTCAGCCCAGGATAACAAGGATCTGTATGCGGAAGAGGCTGCGGTACAAAGAGAAAAGGA
AAGGCAACGGATGCTTGCCATCCCAGGGCTGATTGCCCCTAGCGAATTGCAAGACGAGAT
GGTAGACTCATAGTGCTCTGTGATTCTGCATTGCTAATCCAGTTTGATGTTTGATTAGGC
CTCCAGAGGCCTCCATGTCCCGGAGCCAGAGTTTTCTTCCAGGGTGGTTGTGGTGAAAGG
AGGGTGCCTGCTGTAATTTTATTTCCGGTTCGGCGATTCCAAGATTTGTGCTAGTTGATG
ATAGGGAGGCGTGGACTCAATTTTGCCGCAAGATTTGCTCGGCAGGCCTGGAGCATTTTG
TGGGCTGTGTGGATGGTTAGATGGATGTGTTTTAAGTGCTCGGTGAAACATTTTGTGCGT
GTGCTGAGCATGATATAGTATGGATGTTGATCCTTAATTGTTAGTTTAGTCTATAGATTT
GATGACTGTATTATGATGTATCAATTGACTGAATTCGGTCTGGGCTGGTAGGAAACCTTA
TAATCCATCCTCCTAGTGCTTGTTACTCTTGTTATGTGAAATATGTTTTTTCTGAAAAAA
AAAAAAAAAAGCTCGAGGGGGG

Homology of Contig U35_3624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64080.1	2075	2e-174	protein\|retrotransposon protein, putative, Ty1-copia subclass, expressed
Brachypodium v1_2	Bradi1g00887.1	1075	0.0
Arabidopsis v10	AT5G17020.1	1075	2e-161	\| Symbols: XPO1A, ATCRM1, ATXPO1, XPO1, HIT2 \| exportin 1A \| chr5:5594904-5602467 FORWARD LENGTH=1075