barSeed - Barley Seed Development Database

Probe CUST_21724_PI390587928

Source Contig U35_3627

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21724_PI390587928	Hv_44K_v2	TTGGATCTTGCGCGCGAATTCTAAGACCATGGTTAAGGGCATCTTCAACAGTTTGTTGGT	2079	GeneList: blue MasterList: Transferase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.141	1.744	1.162	0.873	0.326	0.312
Raw	63.835	78.102	45.289	50.934	6.248	6.877

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3627	2276	3e-25	2080 - 2139	100	60 / 60	plus

Contig Sequence (2276 bp)

>U35_3627 2276 Hv_44K_v2
CAGCCGCCACAAGCCAAGCCACCATCCATACATACACAAACGGGATCATAGACAGAAGCA
AGAGGCCGGCGGAGGAGGTCAAGAAGCAGAGCGAGCGGCGACGAGCCCCCGGAGCGGGCC
GGCGGGAGGGCGATGGACATGAAGCGGGCGCGGAGCCCCCGGGCCCCGGCCGACGGCGAC
GGCGAGGGCGACAAGAGGAAGGCTGCCGGCGCCAGGTGGGGCGGCGCCGTCCGGCCCAAG
ATGGTGCTGGTCGGGTTCCTCGTCACCCTGGCCCTCCTCGCCTTCACCTTCGGCGGCCGG
TCGACCCCCCTCCCCTCCACCCCCTCCTCGCCGTCCTCCGTCCCCGAGGCCGGCGGTCGC
CACGTCGTCGCCGGCGGCGAAACGCCCAAAAAAACCGTAATCCCTCCGAAGAACGTGTCG
GCGCCAGCCACAGTTCCGTCGCAGGACAAGCTTCTCGGCGGGCTACTCTCGGCGGCGTTC
GAGGAATCGACCTGCCAGAGCCGGTACAAGTCGTCCCTGTACCGGAAGCCGTCGCCGTTC
CCGCTCTCCCCGTACCTGGTGAAGAAGCTGCGCAAGTACGAGGCGTACCACAAGAAGTGC
GGGCCGGGCACGCAGCGGTACCGGAACGCCGTCGAGCAGCTCCAGGCCGGGCGCAACGCC
GACGACGGCCCCGAGTGCAAGTACGTGGTGTGGTTCCCCTGCAACGGGCTCGGCAACCGC
ATGCTCACCATCGCCTCCACCTTCCTCTACGCGCTGCTCTCCGGCCGGGTCATGCTCGTC
AACGTGCCGCGCGAGCAGGAGGGCCTCTTCTGCGAGCCCTTCCCGGCCACCTCCTGGGTG
CTCCCCGGCGGGTTCCCCGAGGGCAACCCGATGAAGCTCAACGTCGGCGCGCCGGAGAGC
TACGTCAACATGCTCAGGAACGGCGTGATCCGGCACGACACGCCGGCGGCGTCCCTGCCG
GCGCACGTCTACCTCCACGTCGAGCAGACCCGGCTGAGGCTGTCGGACAACATCTTCTGC
GACGACGACCAGAAGCTCCTCGGCAAGTTCGGCTGGATGATCCTCAAGTCCGACAGCTAC
TTCGCGCCGGCGCTGTTCCTGACGCCCATGTACGAGAGGGAGCTGGCGCGGATGTTCCCG
GAGAAGGAGGCGGTGTTCCACCACCTCGGCCGCTACCTCTTCCACCCGACGAACAAGGTG
TGGGGGATCGTGCGGCGCTACTACGAGGCGTACCTCGCCCGGGTGGACGAGAAGATCGGG
TTCCAGATCAGGATCTTCCCGGAGAAGCCGGTCAAGTTCGAGAACATGTACGACCAGCTC
ACCAGGTGCATCCGGGAGCAGCGGCTGCTGCCGGAGCTCGGCTCGCCGGCGAACGCGACC
GGCGAACACGACGGGAAGGTGAAGGCGGTGCTGATCGCGTCGCTCTACTCGGGGTACTAC
GACAAGATCCGGGGCCTGTACTACGAGAACCCGACCAAGACCGGGGAGGTCGTGGCGGTG
TACCAGCCGAGCCACGAGGAGAAGCAGGAGTACGCGTCCAACGAGCACAACCAGAAGGCG
CTGGCGGAGATCTACCTGCTCAGCTACTGCGACAAGATCGCCATGAGCGCCTGGTCCACG
TTCGGGTACGTCGCGTACGGCTTCGCCGGCGTCAAGCCGTGGATCCTGCTCCGGCCGGAC
TGGGACAAGGAGGTGTCGCAGGTGGCGTGCGTCCGGTCCACGTCCGTCGAGCCGTGCCTG
CACTCGCCGCCGATACTCGGCTGCCGGGCCAAGAAGGAGGTGGACGTGGCCCGCGTCAAG
CCCTACGTCCGGCACTGCGAGGACGTCGGGTTCGGTCTCAAGCTCTTCGATAGCTAAACA
TGGAGCTTAAGCATAGTGTATCGTGTTCGGTTCAGGTCCACGTTCCGAAAACTGCAGAAA
GTAAGATTTTTCTTCCTCCCCTCTGTGGATTAATTAGGTGTTTAGGGGGTGTCTTTGCAT
TCAAATTCGTTCTTTGTACTACAACATGTCCCGTACGTACACAAGTACAAGCGTATACAC
AGACAGCAGCTATTTGACCTCGTTTACAAGCGAAAACCCTTGGATCTTGCGCGCGAATTC
TAAGACCATGGTTAAGGGCATCTTCAACAGTTTGTTGGTTAGTTTGTTGGTAAAATATGC
CATGTTATCAACGAACACCTTAACATACAACTACTTCAATGGGTTGTATATAGTTTGCCA
ATAAGATGTGAGGTAATAAATAATGTGCTCTCTCATTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52560.1	576	0.0	protein\|xyloglucan fucosyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g58067.1	588	0.0
Arabidopsis v10	AT2G03220.1	558	5e-160	\| Symbols: FT1, ATFUT1, ATFT1, MUR2 \| fucosyltransferase 1 \| chr2:970401-972353 REVERSE LENGTH=558