barSeed - Barley Seed Development Database

Probe CUST_21722_PI390587928

Source Contig U35_3629

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21722_PI390587928	Hv_44K_v2	GTGGTTCAAGAAACCATCACCGCTCTTCTTCTCAATCTTGCGTCAAACCATCATTGCTGA	116	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43888.1	1257	2e-24	1046 - 1105	100	60 / 60	minus	ABC08578
Harvest21	ABC08577	563	3e-25	117 - 176	100	60 / 60	plus
Harvest35	U35_3629	565	3e-25	117 - 176	100	60 / 60	plus

Contig Sequence (565 bp)

>U35_3629 565 Hv_44K_v2
AGCAGGGCAATGGAGGCCGACATGGACGCGAGCTTGGACTTCTTGGAGCTGGAGGCCCAT
CTCGTCTTCGATCTCGGCAGCGCCGCCGCCGACAGGTACGTGATGAGGTGAGCACAGTGG
TTCAAGAAACCATCACCGCTCTTCTTCTCAATCTTGCGTCAAACCATCATTGCTGACGAC
GTCTGTCTACCTTGCCTAGCAAACGTTGGATTAGCTTGGCTGATTGCTGCAGCTCCTACC
TGCCGGCCGAGGACTCGCTCTCCGGCCTCGACTCCTCCTGCCTCAACGACTCCGCCGGCT
CGCCGGACGGCGCCACCAGCTCGCCGTCCACGGCGTCGACGAGGACGACCAGGGAGAGCA
AGAACGTCGTCGAGGAGAGGGACCGGCGCAAGCGGCTCAACGAGAAGCTCTACGCCATCC
GCGGCGTCGTCCCAAACATCACCAAGATGGACAAGGCGTCCATCATCCAGGACGCCGTCG
CATACATCGAGGAGCTGCAGGAGCAGGAGCGCCGGATCCTTGCCGAGGTGTCCGACCTCG
AGGCCGGCGGCTGCACCGCCGTGGT

Homology of Contig U35_3629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None