barSeed - Barley Seed Development Database

Probe CUST_21721_PI390587928

Source Contig U35_3630

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21721_PI390587928	Hv_44K_v2	GAGTGTCTCCATACATAATCATATAGAACTTCAGTTCAGTTTACATCTTTGTGCACCACA	1088	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.740	5.522	1.509	0.540	0.678	0.604
Raw	70.256	98.335	21.343	11.433	2.889	2.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43248.1	1978	2e-24	1671 - 1730	100	60 / 60	plus	ABC08578
JLOC1	JLOC1_27954.1	1861	8e-25	1667 - 1726	100	60 / 60	plus
Harvest21	ABC08578	1151	3e-25	1089 - 1148	100	60 / 60	plus	ABC08578
Harvest35	U35_3630	1151	3e-25	1089 - 1148	100	60 / 60	plus

Contig Sequence (1151 bp)

>U35_3630 1151 Hv_44K_v2
CAATGGAGGCCGACATGGACGCGAGCTTGGACTTCTTGGAGCTGGAGGCCCATCTCGTCT
TCGATCTCGGCAGCGCCGCCGCCGACAGCAAACGTTGGATTAGCTTGGCTGATTGCTGCA
GCTCCTACCTGCCGGCCGAGGACTCGCTCTCCGGCCTCGACTCCTCCTGCCTCAACGACT
CCGCCGGCTCGCCGGACGGCGCCACCAGCTCGCCGTCCACGGCGTCGACGAGGACGACCA
GGGAGAGCAAGAACGTCGTCGAGGAGAGGGACCGGCGCAGGCGGCTCAACGAGAAGCTCT
ACGCCATCCGCGGCGTCGTCCCAAACATCACCAAGATGGACAAGGCGTCCATCATCCAGG
ACGCCGTCGCATACATCGAGGAGCTGCAGGAGCAGGAGCGCCGGATCCTTGCCGAGGTGT
CCGACCTCGAGGCCGGCGGCTGCACCGCCGTGGTCAAGTCGGAGGCCTCCACGGGCAGCG
AGGGGGTGGAGAACGCCGGCGTTGGCTTCTCGCGGCGGAAGAAGATGAGGAGGACTAGCT
CCTCCTCATCCATCAACGACGCCGTCGCTTCACCTGCCACGCATCCGGTCGAAATCTTCG
AGCTGGATGTGACGCCCATAGAGGAGAAGCTGGCAGTGGTGAGCATGAGGCACAATAATA
CCCAACACGTCATGGCGAAGATGTACAAGGCTCTAGATTCACTTTGTCTCAAGGTTATCA
CCTCAAGTGTCACTGTCGTGGATGGCCGCACAGTCCACACCATGTTCATTGAGACGGAAG
AAATGGATGGTGCTCAGACGATCAAGGAGATGGTACAGGCTGCACTCAGCCATCTCGAAT
TCTCGATGTGAGAAGAAGCTCAACCAAGTCCATGAGTCACTGATGAAGACTAAGTGTCTC
AAAGAATACGTAATGGGCACCCCCAATTACATCATGGTGGAGAGGCATGGTTTGGTCCAA
TTTGATACTACAACATTCTAATAAAAGTGACTACAACTGCAGTCACTTATATGGCCCAAA
AATTAGTCACTGTGCCTAGAATTTGTGTAAGCACGTGGTACTAGTACTCCCTCCCTTCGG
ATTTGTAAGAGTGTCTCCATACATAATCATATAGAACTTCAGTTCAGTTTACATCTTTGT
GCACCACAACT

Homology of Contig U35_3630 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g01900.1	302	1e-59
Arabidopsis v10	None