barSeed - Barley Seed Development Database

Probe CUST_21716_PI390587928

Source Contig U35_3636

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21716_PI390587928	Hv_44K_v2	TCAGTGTAAGCACCTGTTGATATAAGTTAATCTGTATCCCCGGTTTCCGTCGCCAAAAAA	1207	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66426.1	1892	9e-22	1807 - 1861	100	55 / 55	plus	ABC09318 ABC10947
MLOC	MLOC_66426.2	2803	9e-22	1786 - 1840	100	55 / 55	plus	ABC09318 ABC10947
MLOC	AK353915	3021	3e-21	2968 - 3021	100	54 / 54	plus	ABC09318 ABC10947
MLOC	AK371695	3078	3e-21	3025 - 3078	100	54 / 54	plus	ABC09318 ABC10947
JLOC1	JLOC1_43770.1	3886	5e-22	3736 - 3790	100	55 / 55	plus
Harvest21	ABC09318	1015	3e-25	12 - 71	100	60 / 60	minus	ABC09318
Harvest35	U35_3636	1278	3e-25	1208 - 1267	100	60 / 60	plus

Contig Sequence (1278 bp)

>U35_3636 1278 Hv_44K_v2
TGTGCATCCACTCAATATACTTGAAGAGGGCCTGGAAAACAACATACGTTAACGCTTTTC
TTAACAACTAACAAGAGTGTAGGAAACAGTATCAAGTTTTAGGCACCAACTTACTTTTTC
GAAGACCCAGTTGATGTACAAGGTAGCGGAGCCTGGATGGCAGGCGTAACTTCTGATGGG
GATGATGTAACAACAGATTAGCTTTTTTTTTTTTTTTTAGAAAAGGAGGATATACCCCCG
GCCTCTGCATCTAGACGATGCATACAGCCATAACAACAACAGATTAGCTAACAAGTAATA
GTAGCATCGCCAGCATTTTAGTACAATGGCGTGTCATAAAATACTTGTCATGGCATTCTG
AAACTAGGATTTACCTTTGGCACTGTTATTCTCATATTTTGTTCTATCATGTACCGCAAA
GCCAGATTTATTGTGATTCATCTAGCGGCCGCTAGAGGGGCCACCATCGACTCGTTCCTC
ATGGAGGTCTAGCTGAATTTCCTGATGCAGTCCTTAATGCAAAACGCCTTGATCTCTATA
ACTTGTACAAAGAGGTGGTGTCCAGGGGTGGCTTTTATGTGGGCAATGGTATAAACTGGA
AGGGCCAAGTCTTTTCAAAGATGCGAAACCATACCGTAACAAATAGAATGACCGGTGTCG
GGAACACACTGAAAAGACACTACGAGACCTACTTGCTGGAATATGAGCTATCGCACGACG
ATGTGGATGGGGAGTGCTGTTTGCTTTGTCACAGTAGCGCTCCTGGAGATTGGGTGAACT
GTGGTTTATGCGGCGAATGGGCTCATTTCGGCTGTGATAGACGGCAAGGGCTGGGCACTT
TCAAGGATTACGCGAAGACAGATGGGTTGGAATACATCTGCCCCCATTGTAGTATAGCGA
ATTACAAGAAGAAGCCTCCTCCGCCCCAGAAAGTAACCAACGGGTTTGCGAATACCGTGC
TGCCTTTATCACGGAATGTTTAATCCTCTTTCTTTTCTTCCTTTTCTGTTCTTCGCCTCT
CCGCCCTAGGATTCGGGGAGATGAGCCGGTGGTTAGGGTATAGGCCTGATAGAGACGGGG
AAGGCTTTTGTAGTGTTGATCTGTATTATCATCCCATTAATTTGGTTCAGTGTAGGAGCT
TAAGTCTTTGATAGCATGTAACAACCGACAACACAGGGAGGCTACTTACTGCAGTAGTTG
GCCAGATTCAGTGTAAGCACCTGTTGATATAAGTTAATCTGTATCCCCGGTTTCCGTCGC
CAAAAAAAAAAAAAAAAA

Homology of Contig U35_3636 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26390.1	766	7e-114	protein\|AT-rich interaction region, putative, expressed
Brachypodium v1_2	Bradi4g31016.2	770	5e-114
Arabidopsis v10	AT3G43240.1	747	2e-94	ARID/BRIGHT DNA-binding domain-containing protein \| chr3:15210032-15214440 REVERSE LENGTH=747