- Probe CUST_21715_PI390587928
- Source Contig U35_3637
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_21715_PI390587928 | Hv_44K_v2 | CTCTTGCTGTTGTACTGAATCCTTGTCTGTTTTTCCTTGCCAGTTCGTTGCTACTCTAAA | 589 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.876 | 1.566 | 1.014 | 0.880 | 0.485 | 0.551 |
| Raw | 7349.600 | 9266.067 | 5481.237 | 7388.703 | 1458.093 | 1803.013 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369180 | 719 | 6e-24 | 641 - 699 | 100 | 59 / 59 | plus | ABC11191 ABC29466 |
| MLOC | MLOC_16842.1 | 560 | 3e-22 | 499 - 557 | 98 | 58 / 59 | plus | ABC11191 ABC29466 |
| JLOC1 | JLOC1_11624.1 | 653 | 1e-22 | 499 - 557 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC29466 | 240 | 3e-25 | 168 - 227 | 100 | 60 / 60 | plus | ABC29466 |
| Harvest21 | ABC11191 | 698 | 1e-23 | 624 - 680 | 100 | 57 / 57 | plus | ABC11191 |
| Harvest35 | U35_3637 | 663 | 3e-25 | 590 - 649 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3638 | 698 | 1e-23 | 624 - 680 | 100 | 57 / 57 | plus |
Contig Sequence (663 bp)
>U35_3637 663 Hv_44K_v2 CCGACCTGACCTCGCCGCCGTTCTCCGGCTCTCCGCTCGCTCCGCTCCGCTCCGCCGCCT CCCCTGGAAAACACAGGTAGGACTGAATAATAGACAAGAATGGCTTCTACTGGCGTGAAA GATTTCTACCGGCAGAAGAAGAAAGGAGGTGCCGGCAAAACTTCAGCATCTTCTAAGAAG AAACCACAGAATTATACTGGAGGGGCCTCTGTTGGGGCCTCGAATAAGGCTCAGACAGCA GCACTAATTTCTCACGGATCCTTTGACCTCAAAGATGATTTCAGTGAGCAAGAGGAGCAG CTGCGGCAGTTTGACATGGACAGGAAGTTTGGCCCATGCATCGGTGTGAACAGGCTTCAG CGCTGGGAGCGTGCTTCCGCCATGGGCCTCCAGCCACCGCCCCGCCTTCGTGATCTCCTA GCGCGCGCCGCCTCTGGAAACAACCGCAACAACGGCGGCCCCTCCCCTGAGTGCCTCTGG GAGGGTAAGATCTAGAATCAAATCACTTTAGTGACAAGTGTTCCATGGCAACCTAGCACG ACTTGCCTACTGTACTATGAGACTTCTGAGACCATTTTACCAGGCGGAACTCTTGCTGTT GTACTGAATCCTTGTCTGTTTTTCCTTGCCAGTTCGTTGCTACTCTAAAAAAAAAAAAAA AAA
Homology of Contig U35_3637 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g34850.2 | 132 | 6e-51 | protein|POLD4A - Putative DNA polymerase delta complex subunit, expressed |
| Brachypodium v1_2 | Bradi4g35390.1 | 132 | 6e-54 | |
| Arabidopsis v10 | None |