barSeed - Barley Seed Development Database

Probe CUST_21714_PI390587928

Source Contig U35_3638

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21714_PI390587928	Hv_44K_v2	TACTGAATCCTTGTCTGTTTTTCCTTGCCAGTTCGTTGCTACTCTGACTCTTGCCAGTGT	635	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.935	1.613	1.078	0.899	0.505	0.557
Raw	5935.590	7540.777	4585.303	5864.143	1177.174	1428.901

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369180	719	7e-23	653 - 712	98	59 / 60	plus	ABC11191 ABC29466
Harvest21	ABC11191	698	3e-25	636 - 695	100	60 / 60	plus	ABC11191
Harvest35	U35_3638	698	3e-25	636 - 695	100	60 / 60	plus

Contig Sequence (698 bp)

>U35_3638 698 Hv_44K_v2
TGAAACGCGAAAGAGGCGAAGACCTGATTCGCTACCGACCTGACCTCGCCGCCGTTCTCC
GGCTCTCCGCTCGCTCCGCTCCGCTCCGCCGCCTCCCCTGGAAAACACAGGTAGGACTGA
ATAATAGACAAGAATGGCTTCTACTGGCGTGAAAGATTTCTACCGGCAGAAGAAGAAAGG
AGGTGCCGGCAAAACTTCAGCATCTTCTAAGAAGAAACCACAGAATTATACTGGAGGGGC
CTCTGTTGGGGCCTCGAATAAGGCTCAGACAGCAGCACTAATTTCTCACGGATCCTTTGA
CCTCAAAGATGATTTCAGTGAGCAAGAGGAGCAGCTGCGGCAGTTTGACATGGACATGAA
GTTTGGCCCATGCATCGGTGTGAACAGGCTTCAGCGCTGGGAGCGTGCTTCCGCCATGGG
CCTCCAGCCACCGCCCCACCTTCGTGATCTCCTAGCGCGCGCCGCCTCTGGAAACAACCG
CAACAACGGCGGCCCCTCCCCTGAGTGCCTCTGGGAGGGTAAGATCTAGAATCAAATCTC
TTCTGTGGCAAGTGTTCCATGGAAACCTAGCACGACTTGCCTACTGTAGCATGAGACTTC
TGAGACCTTTTTACCACGCGGAACTCTTGCTGTTGTACTGAATCCTTGTCTGTTTTTCCT
TGCCAGTTCGTTGCTACTCTGACTCTTGCCAGTGTTAT

Homology of Contig U35_3638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34850.2	132	7e-53	protein\|POLD4A - Putative DNA polymerase delta complex subunit, expressed
Brachypodium v1_2	Bradi4g35390.1	132	6e-56
Arabidopsis v10	None