barSeed - Barley Seed Development Database

Probe CUST_21713_PI390587928

Source Contig U35_3639

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21713_PI390587928	Hv_44K_v2	AGACATTGTTAGTTTTCAGAATTGCAGAGCTAGCTATGACATACCCTTGTGTTTCTTTGA	699	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376299	3935	7e-23	3859 - 3918	98	59 / 60	plus	ABC10071 ABC10072 ABC39605
Harvest21	ABC10072	1241	3e-25	1166 - 1225	100	60 / 60	plus	ABC10072
Harvest35	U35_3639	775	3e-25	700 - 759	100	60 / 60	plus

Contig Sequence (775 bp)

>U35_3639 775 Hv_44K_v2
CGGCAAAAGAAGCTGCAAAGGCGATGTATGCTATATCGGCTTTAATCAGAAATAACGTAA
ATGGTGAGGAGGAATTCGCTTTGGAAAATGGGAACGCAATGCTGTAGCACATCTTGGGAA
GCAACAGTGTTGATGTTGGGCTTCAGAAGAAGGCAGTGTTTTTATTAACAGATCTAGCGG
ACTTTCAGCTAAATTCTGGAAACTCAGGGCTCACTTTCGTAAGTGAACGCTTTTTGCTGA
AGTCAGTCACTGATATGTTATCAGAGTTTGATCTTGACCTTCAAGAAAAGGTTTTGTTGG
CCATTAGGAGCCTACTGAAGCTTCCCTCGACAGACGCTAGGGACTTCGAGTCATGTGGTC
TAGACAGTGTTCTGTGCAGACTGGGGGTGCAGCTGGAGGAGCTGCCTTCAGAGGAACAGA
AGGAGTATGCCGGGGAGGTTGACGCCCTCCGGAGAGAAGTATTGATGTTGTTCGAACAGA
AGCTCAAGCTGGGTACCGCTGCCGCGGCGGTGTCATAGACAACACACACGGATGAAGAGA
AGAGAAGTAGGCGTTTTCGATCCAGTGACTCAGTGCTGGTTGCCAAGTTTTTGAAAGAGT
AGATTATTTTTGGAAAGAGTCTGGCTGCCAAGTTGAGTCCCTTCTTACTTTTGCCGGAGG
TTTATAGCGGTTGTAGGATTGGATGGAACGATAGGTTAGAGACATTGTTAGTTTTCAGAA
TTGCAGAGCTAGCTATGACATACCCTTGTGTTTCTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33780.1	411	3e-77	protein\|expressed protein
Brachypodium v1_2	Bradi4g34960.1	410	2e-78
Arabidopsis v10	None