barSeed - Barley Seed Development Database

Probe CUST_21712_PI390587928

Source Contig U35_3640

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21712_PI390587928	Hv_44K_v2	TCTTAATAATGCAAATGAAGAAATACGGACCACCTCTGCATGGATCCTGGGTACAGCCAG	380	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370272	1664	2e-24	665 - 724	100	60 / 60	plus	ABC10071 ABC10072
MLOC	AK376299	3935	7e-23	3024 - 3083	98	59 / 60	plus	ABC10071 ABC10072 ABC39605
MLOC	MLOC_46039.1	928	7e-23	202 - 261	98	59 / 60	minus	ABC10072
JLOC1	JLOC1_29843.1	883	4e-23	157 - 216	98	59 / 60	minus
Harvest21	ABC21101	493	3e-25	381 - 440	100	60 / 60	plus
Harvest35	U35_3640	494	3e-25	381 - 440	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_3640 494 Hv_44K_v2
GCCGCGGAGCGGGAGGCCGCTGGCGAGGGGTCTGTGGTGGAGGACGACTTTGCGGGCGGC
TTCGGCTCCCTCGACAGCATGCTGCAGTGGGCCATCGGGAATTCGGATCCAGGAAGGCTG
AAAGAAGAAGCGGCGGATGTGCAGAAGTTATCTGAGGATGAGCTTCTCAAGCGGCGGCAT
GAGATTAAGGACTTGATGGAGAAGTTAAAGATGCCATCAGACGCTGACTTAATGAAGATT
GCAATTGCTGACTTAAACAATGCTTCCATTTCACTGGAGGATCGCCAGCGTGCATTGCAA
GAGCTTTTAATTCTTGTTGAGCCCATTGATAATGCCAATGACCTTGACAAAATTGGGGGC
CTTGTTCCTGTGATTCAAGATCTTAATAATGCAAATGAAGAAATACGGACCACCTCTGCA
TGGATCCTGGGTACAGCCAGTCAGAATAATGCCCTTGTCCAAAGCCAGATTCTTGGTTAT
GGGGCTTTGGCAAG

Homology of Contig U35_3640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33780.1	411	2e-91	protein\|expressed protein
Brachypodium v1_2	Bradi4g34960.1	410	3e-98
Arabidopsis v10	AT3G51980.1	382	2e-59	ARM repeat superfamily protein \| chr3:19285811-19287502 REVERSE LENGTH=382