barSeed - Barley Seed Development Database

Probe CUST_21711_PI390587928

Source Contig U35_3641

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21711_PI390587928	Hv_44K_v2	GACGATGATCTTCCCTGTTGTGTAGCTCCTACAATGAATCAATGACTTTGTTGGAAAAAA	1272	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.125	1.765	1.129	0.804	0.326	0.355
Raw	5293.567	6756.887	3879.347	4344.700	625.077	741.005

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76957.2	863	3e-22	803 - 858	100	56 / 56	plus	ABC10071 ABC10072
MLOC	AK370272	1664	3e-21	1611 - 1664	100	54 / 54	plus	ABC10071 ABC10072
JLOC1	JLOC1_51322.3	960	1e-22	803 - 858	100	56 / 56	plus
JLOC1	JLOC1_51322.2	956	1e-22	799 - 854	100	56 / 56	plus
JLOC1	JLOC1_51322.1	916	1e-22	759 - 814	100	56 / 56	plus
Harvest21	ABC10071	655	3e-25	585 - 644	100	60 / 60	plus	ABC10071
Harvest35	U35_3641	1343	3e-25	1273 - 1332	100	60 / 60	plus

Contig Sequence (1343 bp)

>U35_3641 1343 Hv_44K_v2
GCAAAGGAGCATTTTGATTTCAAAGATGTATCTTGTTTCTGCAGAGTATCCTCTTCATTA
TTAATAGTATTATGCAGATTTGGGGAGTAAATTTTCTTTTTTTTGTGAGCAATATGTGTA
GTTTATGTGTTGTTCAGGCCTGGCCCAATGAATGCTACTGTAAATTTGTCTCTTTAACTT
CACTAAATATGCTTGAAAATGATGTTTATATATCTTTCATTTCACCATTGCTATACCATT
GTAGTGGTTTCTTCTATTTTCTTTTCAAACTGATTGTCAACTGTGCATGTCATCTTATTA
AGAGCCAGTTTCCTTCTATGTTTCCCCATAGGGGTGTCTGTTGTTGAAGTATTTGTTATA
ATCATTTTTTGTTCTAGCCATGTAACATGTGCTGACTGTTTTTTTCTTGGTCAGATTCTT
GGTTATGGAGCTTTGGCAAGATTAGTGAAGATGGGTTATTCCACTTCGACAAAAGAAGCT
GCAAAGGCAATGTATGCTATATCGGCTTTAATCAGAAATAACGTAAATGGTCAGGAGGCA
TTCGCTTTGGAAAATGGGAACGCAATGCTGCAGCACATCTTGGGAAGCAACAGTGTTGAT
GTTGGGCTTCAGAAGAAGGCAGTGTTTTTATTAACAGATCTAGCGGACTTTCAGCTAAAT
TCTGGAAACTCAGGGCTCACTTTCTTAAGTGAACGCTTTTTGCTGAAGTCAGTCACTGAT
ATGTTATCAGAGTTTGATCTTGACCTTCAAGAAAAGGTTTTGTTGGCCATTAGGAGCCTA
CTGAAGCTTCCCTCGACAGACGCCAGGGACTTCGAGTCATGCGGTCTAGACAGTGTTCTG
TACAGACTGGGGGTGCAGCTGGAGGAGCTGCCTTCAGAGGACCAGAAGGAGTATGCCGGG
GAGGTTGACGCCCTCCGGAGAGAAGTGTTGATGTTCTTCCAACAGAAGCTCAAGCCGGGT
ACCGCTGCCGCGGCGGCGTTATAGACAGCACACACGGATGAAGGGAAGGGAAGCAGCCTG
CCGAGTTTTCGATCCAGTGACTCAGTGCTGGTTGCCAAGTTTTTGAAAGAGTAGATTATT
TTCCGAAAGAGTCTGTCTGCCGAGTTGAGTCCCCTCTTACTCTTGCAGGAGGGTTAATGG
GTTATAGTGCTGTGGGATTGGATGGATAGATAGGTTAGACACTTGATAAGATATGGTTAG
TTTTCCCATTCGCAGGACTAGTTACGACATCTGCTGTGTTACTTGGAAGGTTTTCCTTTT
ACTGGAGGAAGAGACGATGATCTTCCCTGTTGTGTAGCTCCTACAATGAATCAATGACTT
TGTTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33780.1	411	2e-91	protein\|expressed protein
Brachypodium v1_2	Bradi4g34960.1	410	2e-92
Arabidopsis v10	None