barSeed - Barley Seed Development Database

Probe CUST_21700_PI390587928

Source Contig U35_42857

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21700_PI390587928	Hv_44K_v2	GCTGAATTAAGTCCTAGGTGTTTCTGTTCAGCCTCTAACTCTGTCTTTTTGTTTGACAGC	272	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8651.1	1431	2e-24	821 - 880	100	60 / 60	plus	ABC04226 ABC38813
JLOC1	JLOC1_5739.1	903	8e-25	470 - 529	100	60 / 60	plus
Harvest21	ABC38813	609	3e-25	273 - 332	100	60 / 60	minus	ABC38813
Harvest35	U35_42857	609	3e-25	273 - 332	100	60 / 60	minus

Contig Sequence (609 bp)

>U35_42857 609 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAGTTGCAAGATGCTTAGCAAAACCAAATAAATATAGCAGGCA
ATCATGTGGTTCTCTAAGTAGTCAAACTGTCTCATCAGCATAATTTGGTATCCAATAAGC
ACAAAAGTTCTAGAGAACAAATGTTCACCAAATACATCAGAGTGGAAGCACAGATAGACA
TAAAACAGTAAAAGTCTAACAAACAGCTAATGTGCTCAGCAGAAACCCCGAGGTAGCACT
CAGCCAACAGTCGAATGCTAGGACCTTTACATGCTGTCAAACAAAAAGACAGAGTTAGAG
GCTGAACAGAAACACCTAGGACTTAATTCAGCAAAGTATATCGCAAACAAGATTTTTAGT
TGTTGTCAGTCCAAATGTGAAATCCTGCTCCAAAAGTTTACTTCCTCAAATTTTCAATAT
ATTGGAGGCGGGGATCCTTTAGAACAATGTCACACATGAGTTAAGGTATAAGGTAGATTC
TTTAACAATGGTCAGAGGGGAGGGGAAACGAACATCCAAGGGAGCTAAGTCAGAGATATG
ACCTTATGAACCACATCCACTTTTAGCTAAAGATCAGGATTCTTTAGAGGTAGTATCAAA
GTCTGGGGC

Homology of Contig U35_42857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None