barSeed - Barley Seed Development Database

Probe CUST_216_PI415269222

Source Contig TA31000_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_216_PI415269222	Hv_44K_v2	GGTAGTCCCTCCGATCCAAATTAGCTGATTCCGTAGAAACCATTTACTATTGTTTTTATT	1934	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2075.1	2048	2e-24	1949 - 2008	100	60 / 60	plus	ABC01560 ABC01562
JLOC1	JLOC1_1251.1	2372	8e-25	2057 - 2116	100	60 / 60	plus
Harvest21	ABC01560	2012	3e-25	1926 - 1985	100	60 / 60	plus	ABC01560

Contig Sequence (1994 bp)

>TA31000_4513 1994 Hv_44K_v2
ATCGACACCAGTGGAAGTTTCTTCCGGTCCCAGAGAGATCGCGGAGGGGAGGAGGATGAC
GGGAGGGCGCGCGGTGCTCCTGCTGCCGCTGCTGGTGATCTCGGCGCTGTTCGCGCAGAT
CAGCGCGTCGGATCCGCTGTTCCACGAGTCCTTCGACGAGAGCTTCGACGGGAGCTGGAT
CGTGTCCGGCAAGGATGAGTACAAAGGTGCATGGAAGCACTCGAAGAGTGATGGCCATGA
AGACTATGGCCTCCTTGTTAGTGAGCCAGCCAGGAAATATGCCATAATCAAAGAGCTTGA
TTACCCTGTTACTTTGAAGGACAAGACAGTTGTCCTGCAGTTTGAAGTGAGGCTTCAGAA
TGGCCTTGAGTGTGGAGGTGCTTATATCAAGTACATCCGTCCTCAGGCTGTGGGATGGAA
CGCCAAGGACTTTGACAATGATACTCCATACACAATTATGTTTGGTCCTGACAAGTGCGG
TTCAACAAACAAGGTTCACTTCATCCTGAAGCACAAGAACCCTAAGACTGGCAAATATGT
TGAACATCACCTCAAGTCCCCGCCCTCTGTCCCATATGACAAGCTCTCTCATGTCTACAC
GGCTATCTTGAAGCCGGATAACGAGGTCAGAATTTTGGTTGATGGGGTGGAGAAGAGCAA
AGCAAACTTCCTGTCTGCTGATGATTTTGAGCCAGCACTTATTCCATCAAAGACTATTCC
TGATCCCGACGACAAGAAGCCAGAGGACTGGGATGAGAGAGCTAAAATCCCTGATCCAGA
TGCCGTGAAGCCTGATGACTGGGATGAGGATGCCCCAATGGAAATTGTGGATGAGGAGGC
CACCAAGCCTGAAGGATGGTTGGATGATGAGCCTGAGGAAATTGATGATCCAGAGGCTGC
TAAGCCTGAGGACTGGGATGATGAGGAGGATGGCGAATGGGAGGCACCGAAGATGGACAA
CCCCAAGTGCGAAGAGGCACCTGGATGTGGTGAATGGAAGAAGCCAATGAAGGATAACCC
TGCCTACAAGGGCAAGTGGCATGCACCCCTGATTGACAACCCCAACTACAAGGGAATCTG
GAAGCCCCAAGAAATCCCCAACCCTGAGTACTTTGAGCTTGACAAGCCTGACTTTGACCC
AATTGCTGCTATTGGAATTGAGATCTGGACAATGCAGGATGGCATCCTGTTTGACAACAT
TCTTATTGCCGATAATGAGAAGGTAGCCACCTCTGTCCTGGAGAAGACATGGAAGCCCAA
GTTTGATGTTGAGAAGGAAAAGCAGAAGGCTGAGGAGGCTGCAGCAGGTGCATCAGAGGG
CCTTTCTGAGTTCCAGAAGAAGATCTTCGACATTTTGTACAAGGTCGCAGACATCCCGTT
CTTGGAACCATACAAGACCAAGATCATTGAAGTGATTGAGAAGGGAGAGACGCAGCCGAA
CATTACAATTTCGATTCTGGCCTCCGTCGTTGTCGTCATTGTGACTGTACTCTTCAGAAC
CTTGTTTGGTGGCAAGAAGCCAGTGGCACCTGTGAAGCCCGCTGCTGAGACCAAGAAGCC
CAGTGCTGTTGTTCCTGATGCCACCGCTGGAAGCAGCGGCGACAAGGAGGAGAAAGAGGA
CGACAAGGATGCGCCACGCCGAAGGTCGCGAAGAGACGCATAAACTAACTCTTGGTGCCT
TCGCATTTTGAAGGACTCGGCTCTAGCCTTTTTGAGAACGCCTCGAGTGTATAATCGAAC
CCTCTGCTGCTAGTAGCAACCTCTAGTTTTTAAGTCGCTAGAAATTTACGAGCCGGCGAA
GCTCGTGTTGATCGGTTGTTTGTGTGCTGTTCTGAATCAGCTAGAAGAGACTGTTTTATT
TTTCCTTTTCTTTTGTTTTATATCAGATGAAACATGAAGCTTGTGTTTGGTTGTTTGTGT
GCTGTGCTAAATCAGGTAGTCCCTCCGATCCAAATTAGCTGATTCCGTAGAAACCATTTA
CTATTGTTTTTATT

Homology of Contig TA31000_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g32950.1	538	protein\|calreticulin precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g01440.1	536
Arabidopsis v10	AT5G61790.1	530	\| Symbols: CNX1, ATCNX1 \| calnexin 1 \| chr5:24827394-24829642 REVERSE LENGTH=530