barSeed - Barley Seed Development Database

Probe CUST_21689_PI390587928

Source Contig U35_16590

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21689_PI390587928	Hv_44K_v2	GATGTTAATTTGCCCTCTATGAGAGAAACTAAAAGTGTGTTCTTGATTGTAACAGCGATC	589	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.794	0.663	0.587	0.985	1.923	5.738
Raw	3.394	3.219	2.559	12.377	9.137	30.216

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51412.1	874	7e-23	677 - 736	98	59 / 60	plus	ABC05429
MLOC	MLOC_51412.2	562	7e-23	467 - 526	98	59 / 60	plus	ABC05429
JLOC1	JLOC1_32842.1	703	4e-23	117 - 176	98	59 / 60	minus
Harvest21	ABC05430	678	3e-25	589 - 648	100	60 / 60	plus
Harvest35	U35_16590	685	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_16590 685 Hv_44K_v2
GCAACATTCACACATAGACGACCAAGGTAGCTCTCGTCGAAGTAGAGGAGGCCGCCGGAG
TTAACTCGAGCAGTTTGATATGGCGATCAGGAACGTGACGGCGGCGACGCGGTCGCTGGA
CGGGGACATGACGGTGGACGAGTTCAAGGAGTGGCTCCGGCGGTTCGACGTGGACCGCGA
CGGCCGCATCAGCCGCGACGAGCTGCGGTGCGCGATGCGCACCATCCGGACGCGCTTCTC
GGGGTACAAGAGCAAGCGTGGCATCGAGTACGCCGACACCGACGGCGACGGCTACGTCGA
CGACGGCGAGGTGGACGGCCTCATCGAGTACGCGCAGAGGAGCCTCGGGCTCAGGATCGT
CGCCTACTAGAGAGGAGTCAAGCTAGGTCTATTAAGGGAAGCTAGCTCCATATCTATCCA
TGCATGTTACCTGCTAGAATAAGCTTTGATCAATCGCCTGTACCTTCGCTTTCTTGTGTA
CTTATTGGCTAATCTGTGCCGACGTGTGCGTTTGTGATCTATCATGATGTATTTGCAGCG
TGTGGCGCAGGCGGCCGGCAGGTTCGCCTTTGCCTACCAGGTTGCCGTCGATGTTAATTT
GCCCTCTATGAGAGAAACTAAAAGTGTGTTCTTGATTGTAACAGCGATCAAAAAAAAAAA
AAAAACTTTTTATTAAAAACGTAAG

Homology of Contig U35_16590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None