barSeed - Barley Seed Development Database

Probe CUST_21684_PI390587928

Source Contig U35_16593

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21684_PI390587928	Hv_44K_v2	AGGCATGCAGTCAGGATGTATATACGGTGCTCATCTATGCTATTGGATTGCATGAAAAAA	1995	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376864	2082	9e-22	1981 - 2035	100	55 / 55	plus	ABC06225 ABC09588 ABC32230
MLOC	AK372452	648	9e-22	592 - 646	100	55 / 55	plus	ABC06225 ABC32230
MLOC	MLOC_66690.1	500	9e-22	200 - 254	100	55 / 55	minus	ABC06225 ABC32230
JLOC1	JLOC1_43978.1	701	5e-22	145 - 199	100	55 / 55	minus
Harvest21	ABC32230	555	2e-22	478 - 532	100	55 / 55	plus	ABC32230
Harvest21	ABC06225	2075	2e-22	1955 - 2009	100	55 / 55	plus	ABC06225
Harvest35	U35_16593	2142	3e-25	1996 - 2055	100	60 / 60	plus

Contig Sequence (2142 bp)

>U35_16593 2142 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGCTCCTCTTTCTTTTTCCTCCACCTCTATCGCTCCTCCTC
CCCCCGGACTCCACCCCAACCCCCTCTCCGTCGCGTCGCCGCGGAGCCCTAGGACGGCGT
CCCCGCGCTACCGCCATGGCACAGCCGTCGCAGGAGGCGATCGAAACTTTCATCAGCATC
ACCGGCGCCGACGAGGCCGTCGCTGCCCGCAAGCTCGAGGAGCATAGCGGTGACCTAAAT
GAAGCGGTGAATGCATACTTCAATGAAGGAGATAGATCAACCACCAGAATCAATCAGAAT
CCGATACCTGACAGTCATGATGATGTTATGGATCTGGACGAACCATTTGATCCTGCATTT
AGCCGATCTACGGGCAACCCTTTTGGTATTTTGGACCCAAGTTTTGTTGAAAGGGCAGCT
GCTGGTTTCTTTGGTCAGGGACCTCAGGTTACACATCCCAGGGATGTGCGGCAGATACCT
ATTGAAGTTAAAGACACCAATAATCCTCAAATTGGAAGTTCTGGTCAGGGTCCTGTTATT
GAAGATGTTACTGGACGCGAGTCTTTATATGGTCTGGAGGTTCATGGGACTGTTGTCATT
GATGAGAATGATGATGACTTGCCATCTACCCATGCTCCTGTTATCCCAAGAAATACTCCA
AGAACATACAATTCTGCACCAAGTGCTCCTCCATTGGTGGATGTTAGTGACTATAACAAT
GACATAGAAGAGGAGATGATCCGTGCAGCAATTGAAGCATCAAAAAGGGATGCGGAAGAA
CTTACAAATGTAGCAGAGCGAGATAGAGTTCTACTTCAAGAGGGGATGCATGCAGTTGAT
AATTCTTCTGATTTATCTGATAAGGAAGACATTGAAAGAGCAAATGAGGCAGTTGAAAGG
CAAGTACTAACCACAGGACAAGCTGGAACTTCTAGGCAATTGGTAGATGAAGAGAACTTC
CAAGATGATATTGAAGACGTTGACGAAGAACCTTTAGTTAGACAACGTTCTAGGCGTGTT
CTATCTGGAACTGCCGGGCCAACAGAAGCAGTGCAAAGGGCTGATAGTCCTCCCGGCCCT
CAGCCTCATGCTACTCAAAATGCTCACCAGCACAATGGAGCTTTCCCCTCAGAGTGGGGA
GGCATTTCTTCTGAAGAGCATGATGAAGCTGTTATGCTTGAGGCTGCTATGTTTGGTGGG
ATTCCTGAACACACAGAATATCCATTTCCCCTCCCATCTCATGGGATCTCAACTGGCTAT
CCCCGAGTAGCGCATCCTCCATCACCAACATTAACTGCACAGAGGTTGTTAAGGGAGCAG
CAGGATGATGAGTATCTTGCAGCTCTCCAAGCTGATAGAGAAAAAGAGTTGAAGGCTGTG
GAGGATGCTGAGCTCCGTAGATTAGAAGAAGCTGCTGCAAGAGAAGCTGCAATTGAAATG
GAAAAGCAAAAGAACGAGGAAAAGCTGAGGAAGCAACTTGAGGAAGAGGAGTTGGAGTCC
ATGCTTGCAGCCAAACGAGCATCATTACCAAAGGAGCCACTGCCAAATGCTGAAGGAGCC
GTCACAGTTGTAGTTCGCATGCCTGATGGCAGTCGCCAGGGAAGGCGCTTTTTGAAATCT
GACCAGCTCCAGGTTCTGTTTGATTTCATAGACATCAGCAAGACGTTCAAGCCAGGAACC
TATAGACTGGTGAGGTCTTACCCCAGGCGTGCATTCACCAACGAAGAGTGTCAGATGTCG
TTGAGTGATGTGGGCCTCAACAGCAAACAGGAGGCCTTGTTTCTAGAACAAATTTCAGGA
TAGTGTGAAGGATTTAGTAATGGATGACATCCAACTCGGGATTCATACCTTTTTTACTTC
TATCTGGCATATGTTGATGAAAAGTTAGCAAGGTTTCTCGTGAACATTCGTGTCGAGAAA
GGTTATCCTCTTTTGTTTTATGATCCAGTGATAGTAAGTTCCGTTATGTAGTACTTGGTG
TCGCAATTCCACTCTAGGCATGCAGTCAGGATGTATATACGGTGCTCATCTATGCTATTG
GATTGCATGAAAAAAAAAAAAAAATCTGTTATTCGAGTTTGCGGACATCATGATAAGGTT
TTTTGTGAGATAAAAAAAAAAAAATTCAAAAAAAAAAAAAAA

Homology of Contig U35_16593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g43300.1	583	0.0	protein\|UBX domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi3g42080.1	559	0.0
Arabidopsis v10	AT4G11740.1	564	5e-128	\| Symbols: SAY1 \| Ubiquitin-like superfamily protein \| chr4:7071955-7075256 FORWARD LENGTH=564