barSeed - Barley Seed Development Database

Probe CUST_21675_PI390587928

Source Contig U35_42862

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21675_PI390587928	Hv_44K_v2	TGGTATCATCGTTCTTCTGGTCATCAACTCCACCATCTCCTTCATCGAAGAGAACAATGC	378	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75846.4	3380	2e-24	496 - 555	100	60 / 60	plus	ABC00002 ABC00268 ABC00680 ABC37456
MLOC	MLOC_75846.3	3480	2e-24	410 - 469	100	60 / 60	plus	ABC00002 ABC00268 ABC00680 ABC37456
MLOC	MLOC_75846.2	3314	2e-24	410 - 469	100	60 / 60	plus	ABC00002 ABC00268 ABC00680 ABC37456
MLOC	MLOC_75846.1	3076	2e-24	410 - 469	100	60 / 60	plus	ABC00002 ABC00268 ABC00680
MLOC	MLOC_75846.5	3497	2e-24	410 - 469	100	60 / 60	plus	ABC00002 ABC00268 ABC00680 ABC37456
JLOC1	JLOC1_50591.1	3489	8e-25	410 - 469	100	60 / 60	plus
Harvest21	ABC39335	590	3e-25	145 - 204	100	60 / 60	plus
Harvest21	ABC00680	3411	6e-22	451 - 507	98	56 / 57	plus	ABC00680
Harvest35	U35_42862	590	3e-25	379 - 438	100	60 / 60	plus
Harvest35	U35_14211	3451	6e-22	492 - 548	98	56 / 57	plus

Contig Sequence (590 bp)

>U35_42862 590 Hv_44K_v2
GGCGGCCTCGAGGAGATCAGGAACGAGGCCGTCGATCTGGAGAACATCCCCATCGAGGAG
GTGTTCGAGCAGCTGAAGTGCACGCGCCAGGGGCTCACCTCCGATGAGGGGGCACAGCGT
GTTGAAATCTTCGGCCTCAACAAGCTCGAAGAGAAGAAGGTGAGCATCGTTACTTTTGGT
TTCTGATGCAAGTTTGGTTCGTGTGTTCTTGCATCGTATTGATTGCTTCCTTGTGGGTCT
CGTTTTGCAGGAGAGCAAAGTCCTCAAGTTCCTGGGATTCATGTGGAACCCGCTGTCCTG
GGTCATGGAGATGGCCGCCATCATGGCCATTGCACTGGCCAACGGTGGTGGGAAGCCTCC
GGATTGGCAGGATTTTGTTGGTATCATCGTTCTTCTGGTCATCAACTCCACCATCTCCTT
CATCGAAGAGAACAATGCCGGCAACGCCGCTGCTGCTCTCATGGCCAACCTTGCACCCAA
GACAAAGGTCCTCAGGGATGGTCGATGGGGCGAGCAGGAGGCATCAATCCTGGTTCCTGG
TGACATTGTCAGCATCAAGCTTGGTGACATCGTCCCTGCTGATGCTCGTC

Homology of Contig U35_42862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56160.1	952	1e-64	protein\|plasma membrane ATPase, putative, expressed
Brachypodium v1_2	Bradi5g24690.1	952	5e-68
Arabidopsis v10	AT2G18960.1	949	9e-59	\| Symbols: AHA1, PMA, OST2, HA1 \| H(+)-ATPase 1 \| chr2:8221858-8227268 FORWARD LENGTH=949