barSeed - Barley Seed Development Database

Probe CUST_21666_PI390587928

Source Contig U35_42867

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21666_PI390587928	Hv_44K_v2	TCTCATGCTCTGAAGCTTCTGATGCATCATATAGCTACTTCTCATTGTATGTTTATTCAC	106	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81960.1	3225	2e-24	459 - 518	100	60 / 60	minus	ABC19280 ABC38826
JLOC1	JLOC1_54513.2	2538	8e-25	2468 - 2527	100	60 / 60	plus
JLOC1	JLOC1_54513.1	2508	8e-25	2438 - 2497	100	60 / 60	plus
JLOC1	JLOC1_54514.1	2812	8e-25	43 - 102	100	60 / 60	minus
Harvest21	ABC38826	579	3e-25	107 - 166	100	60 / 60	minus	ABC38826
Harvest35	U35_42867	579	3e-25	107 - 166	100	60 / 60	minus

Contig Sequence (579 bp)

>U35_42867 579 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTGTTAAGAGGTTTGCATACTTGCAACTCAAACCTTATAAAGT
GCTAAAGAAATATTTCATCTGAAGTACAGTCTCTAGTTGAATAATAGTGAATAAACATAC
AATGAGAAGTAGCTATATGATGCATCAGAAGCTTCAGAGCATGAGAATACATTGAGGCAA
ATTTATATTTATTGGAACAGAAAAATACCTTATCAAAACAGTAAGGACTAGGGTTCTGCA
GCATTGGGATTTTCTTCTGCACCAAGAGCCAGAACGACTTTCCTTAGGATGGCATCAACT
GGCAGATGTGAGTTCTCAACGGCCTTGCTTATAGCTTGCCATCTCTCACCATGTTTTGGC
TCAGCTGCAATGCATCGTTTCAGAACATCCTTTTGTGTGTCCGCATTTCCGTGCTGGAGT
TCAAATTTGTAGTACAATGCCCAAAAATCCCCAATGTCAGGAGCAAGAGTAACAGCTCTG
TTCAACCAACTCCTTGCTTTATCAACCTTCCTGTCATGCCAGAATAGTTTGGCGACAGCT
GCAATGACATGTGGATCATGATCACATCGCTTTATAGCA

Homology of Contig U35_42867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35550.1	1040	4e-69	protein\|pre-mRNA-processing factor 6, putative, expressed
Brachypodium v1_2	Bradi3g29980.1	961	6e-68
Arabidopsis v10	None