barSeed - Barley Seed Development Database

Probe CUST_21665_PI390587928

Source Contig U35_28574

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21665_PI390587928	Hv_44K_v2	GCAATGAAAAATCATGATGCACTACTGCAAAACGATTCCTGTCTCGAGCTTAAGCTTCAC	607	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.483	0.559	1.150	1.924	1.035	1.144
Raw	26.976	48.861	88.298	244.518	44.383	53.752

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59218.2	1652	2e-24	917 - 976	100	60 / 60	minus	ABC21897
MLOC	MLOC_59218.1	1751	2e-24	917 - 976	100	60 / 60	minus	ABC21897
JLOC1	JLOC1_38524.2	1731	8e-25	780 - 839	100	60 / 60	plus
JLOC1	JLOC1_38524.1	1602	8e-25	651 - 710	100	60 / 60	plus
Harvest21	ABC27537	667	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_28574	667	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_28574 667 Hv_44K_v2
GGGGAACAGGTACCCCCCCAAAACCGCCACCGGCTTTCTCTGCTCTCCCATTCCGGTGCT
GAAGCTGGGGCATGCTTATTACTCAGAAATGGAAATAGATACACTGAAGGATGAGTTCGG
TCGTGTTGTTAAAAAGCAGAAACTTGCATCCTCAAGAACTATAGATTTGGTAAACCAAAT
CGAGAAAGAAATTGAGCAGGCTATCAGTGCTATCCAAGAAAATGTCACAGCTAGGGATGC
TGCATCAAACCTAAACCATGAAATTCTTACTAATCTGAAGAATACGCTGAAAGTGTTGGT
TCCAGTGAAGCAACTTGAGAGCTGCCAGAAAGAAATGAACACTGCACTTGGCAAGTGGGT
CAAGACCACCGAGAAATTCTTCATCAATGATATTTCAAAAGCTTACAAGAATGCCGACAT
GGAACCACATGTACTGAATGAGATTATTGCAAACCATCTATACCGTGAGGCATTATTTGA
CATAGGTGACAACTTTCTTGGAGAGGCCAGTTGTTTAGCACCTATAAAACTGAAACAACT
GTTTCAGGAGATGTATGAGATTTGTGGTGCGCTGCGGACTGAGAAATCTGAGCCAGCTCT
GAGCTGGGCAATGAAAAATCATGATGCACTACTGCAAAACGATTCCTGTCTCGAGCTTAA
GCTTCAC

Homology of Contig U35_28574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g38940.2	387	3e-54	protein\|RMD5 homolog A, putative, expressed
Brachypodium v1_2	Bradi3g51260.2	387	6e-98
Arabidopsis v10	None