barSeed - Barley Seed Development Database

Probe CUST_21663_PI390587928

Source Contig U35_28577

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21663_PI390587928	Hv_44K_v2	TTTATTTGCAAAGGGATTGCATGAAAGGCTGGTGCCCTTAATGGGTCATTGCTTTGATAA	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357572	3185	7e-23	1881 - 1940	98	59 / 60	plus	ABC48667
MLOC	MLOC_51130.2	2507	7e-23	1125 - 1184	98	59 / 60	plus	ABC48667
MLOC	MLOC_51130.1	1421	7e-23	1125 - 1184	98	59 / 60	plus	None
JLOC1	JLOC1_32636.1	2671	4e-23	1129 - 1188	98	59 / 60	plus
Harvest21	ABC27541	667	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_28577	667	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_28577 667 Hv_44K_v2
GTTACTTTGAGGGCAACCTATCAAGTGTTGCCCGTGGTGGAAATGTGTCGTCTGAGATGA
ATTGCTTCCTTGACGTTGCCGGGCAGCGTAGCCTGGAGGATTGCCAACAGTTCTACGCTG
GGCGTGGACTGCCGTATGATGGGCCGGTTGCCGCACCAACGCCACAGCCTGCGCCTGCAG
CAAAGAGCAAGGGAAGGCACAAGAACTTGAAGTACATATTGATTGGGGCCATCGGTGGCG
GGGTACTGCTTGTAGCCTTGGTTGCAGCCGTTGTGTTTTGCGTTATGTGTTCTAAGAGGG
GTAGGAGTGATCAGAGGGAAAGTGGCGCTCCAAGTGCACCGTCAGGAGGGCATGGGAGTG
CAAGGGCTGCAGCAGCTACTGGTGCCACACAGCCATCTGCCTCCCCTGCAAATTTGGCGA
AGGTCGGTGATTCATTTGCTTATGACCAGCTCGCCAGTGCCACCTCAGGGTTTGCGGAGC
AGAGGATTATCAAGCATGGTCATTCAGGTGATCTATACCAAGGTGTGCTCCAAGATGGGA
CCACCGTGGTCGTGAAGAGGATCACTACCCGTGTGGCTAGAAAAGATGCGTATATGACGG
AGTTAGATTTATTTGCAAAGGGATTGCATGAAAGGCTGGTGCCCTTAATGGGTCATTGCT
TTGATAA

Homology of Contig U35_28577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g10260.2	612	1e-58
Arabidopsis v10	None