barSeed - Barley Seed Development Database

Probe CUST_2164_PI390587928

Source Contig U35_11013

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2164_PI390587928	Hv_44K_v2	CCATTAATGGTGATTTTCCTCCTCATCAGTGTACAAGCTTTAGAAGATCTAATGTTTTGT	599	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366590	1844	2e-24	1668 - 1727	100	60 / 60	plus	ABC24439
MLOC	MLOC_53437.1	1335	2e-24	131 - 190	100	60 / 60	minus	ABC24439
JLOC1	JLOC1_34334.1	1623	8e-25	1167 - 1226	100	60 / 60	plus
Harvest21	ABC24439	683	3e-25	600 - 659	100	60 / 60	plus	ABC24439
Harvest35	U35_11013	683	3e-25	600 - 659	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_11013 683 Hv_44K_v2
TCCCGGGCTCCAGACTACGTTGCGACAGGCCATCTCACCACCAAGAGTGATGTTTGGAGC
TTTGGAGTAGTACTCTATGAGATCCTCACCGGACGACGTTCTATGGAAAAGAACCGCCCC
AAGAATGAGCAGAAATTGCTGGAATGGGTGAAGCAGTATCCTGTCGGAAGTAAGCAGTTC
AGCAAGATTATAGATACAAGACTCGAAGGCCGGTACTCTAGGCAGGGAACTAGAGAAATT
GCTAAGTTGGCCAACACCTGCCTTGCAAAGCGCTCAAGGGACCGTCCAACCATGAGACAG
GTAGCTGACAGCCTAAAGCAAGTGATGCAGCTCAAGCAGTTGGATGGCGAAAGTCTCACA
TCAAGGGACAACTCGCCACCTCATGATGTCCAGGGTAAGCCAACAGCAGACGATATTGCC
GTGGCTTCAGCAAGGCGGCGGATGCTTCACCTTGCTGCTCTAGGTGAAAATGGAAACAGC
ATCGCAAGGAGGAGATTCATGTTCATGAAGGCTGCCGCTGCTCCAACTCCAACGTGATCT
TCTGTAACAATTAATGTCTTAGACTCCGTGTACATTGTAATGCGTCTATGGAAAAAATTC
CATTAATGGTGATTTTCCTCCTCATCAGTGTACAAGCTTTAGAAGATCTAATGTTTTGTT
TACTACTCTTCAAAAAAAAAAAA

Homology of Contig U35_11013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43430.1	466	3e-81	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi3g50280.1	439	1e-89
Arabidopsis v10	None