barSeed - Barley Seed Development Database

Probe CUST_21649_PI390587928

Source Contig U35_42871

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21649_PI390587928	Hv_44K_v2	ACATCCAATGCCAAGTACATCAGTTTGGAAATGCACAAATGCAAGGAGCCGACATTGGAG	211	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375510	3651	2e-24	1577 - 1636	100	60 / 60	plus	ABC38833
MLOC	MLOC_70159.1	2948	2e-24	986 - 1045	100	60 / 60	plus	ABC38833
JLOC1	JLOC1_46546.1	2949	8e-25	998 - 1057	100	60 / 60	plus
Harvest21	ABC38832	468	3e-25	212 - 271	100	60 / 60	plus
Harvest35	U35_42871	468	3e-25	212 - 271	100	60 / 60	plus

Contig Sequence (468 bp)

>U35_42871 468 Hv_44K_v2
TGTGAATGCGGCACGAGGCGGAGGCATACCTTTCCCACGTAACCGGCATTTCGTCGGAAG
GGAGAAAGAGCTGAGTGAAATCGAGGCGATATTCTTCGGATCCTCGGTGGATATCCAAGA
AGTGTTGGACTGCTCAAGGGCTTCCACCACAAATGAAAGATCCAGCGGCGTGTCCGATGG
CTTTGCCGATGAGGAGAGCGACACTGTGAGGACATCCAATGCCAAGTACATCAGTTTGGA
AATGCACAAATGCAAGGAGCCGACATTGGAGGCCTGGATCGATCCGGTGATCGAGCTGTC
GTCGGGGAAAGGTAGAAGCCTTCAGAAGCAGAGATCAAAGCACAGGAGGTCAAGGTTCCG
GTGCAACAGCAAGGGCTGCGGGGGTGCCAGTGTGGTCTGCATCAATGGCTCCTCAGGTAT
TGTCAAGACAGAGCTGGCATTGGAGTTTGCTTACCGGTATTCACAGCG

Homology of Contig U35_42871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38970.1	987	5e-81	protein\|transmembrane receptor, putative, expressed
Brachypodium v1_2	Bradi3g39360.1	993	2e-82
Arabidopsis v10	None