barSeed - Barley Seed Development Database

Probe CUST_21648_PI390587928

Source Contig U35_42872

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21648_PI390587928	Hv_44K_v2	TCCAAGAATACAGAGAAGATGAACTTTGTTTGCCAGCATACGCTAATGAAGGCAGAACTT	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372720	1893	2e-24	721 - 780	100	60 / 60	plus	ABC38835
MLOC	MLOC_4381.4	1660	2e-24	1178 - 1237	100	60 / 60	plus	None
MLOC	MLOC_4381.3	1300	2e-24	662 - 721	100	60 / 60	plus	None
MLOC	MLOC_4381.2	1008	2e-24	683 - 742	100	60 / 60	plus	None
MLOC	MLOC_4381.1	1182	2e-24	698 - 757	100	60 / 60	plus	None
JLOC1	JLOC1_2715.3	1241	8e-25	662 - 721	100	60 / 60	plus
JLOC1	JLOC1_2715.2	1273	8e-25	687 - 746	100	60 / 60	plus
JLOC1	JLOC1_2715.1	1069	8e-25	687 - 746	100	60 / 60	plus
Harvest21	ABC38834	710	3e-25	648 - 707	100	60 / 60	plus
Harvest35	U35_42872	710	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_42872 710 Hv_44K_v2
GCTCCATTTTCCCGCCTTCCCCAAACCCTAGCCTCGGAGGCGATTTTCGATCCATCCCAC
CGGAGAAGAAGACGACGGAGAGGATGCGGGGCGGCACGGTGCAGATCAACTGGCACGACC
TGCAGCCGGTGCTCACCCTCGACTTCCACCCCGTCTCCCGCCGCCTCGCCACCGGCGGCG
GAGACCACGACATCAAGATCTGGGTGGTAGCGTCGGATGAATCGGAGGAGAAGCTCCCCA
CCGCTTCCTACGTCAGCAGCCTCTCGTCTCACAGCTCCGCCGTCAATGTTCTCCGTTTCT
CTCCTTCTGGTGAGAATCTAGGGTCCGGTGCTGATGGTGGTGGTATCATCCTTTGGAAAT
TGCAGTCCACTGATGATGGCGAGGCCTGGAAAGTACATAAATCGTTATTGTTCCATCGCA
AGGATGTTCTTGACCTGCAGTGGTCGAGTGATGGGTCATACCTTGTTTCTGCTTCAGTTG
ATAACAGTTGCATAATATGGGATGCTAATAAAGGTGTGGTGCAACAGATGTTGGAAGGCC
ATTTGCATTATGTTCAGGGGGTGGCATGGGATCCTCTGGGTCAATATATTGCCTCTTTGA
GCTCGGACAGAACTTGTAAAATTTATGCAAACAAGCCTCAAGGCAAATCCAAGAATACAG
AGAAGATGAACTTTGTTTGCCAGCATACGCTAATGAAGGCAGAACTTCAA

Homology of Contig U35_42872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01680.1	506	9e-124	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g13280.1	504	2e-129
Arabidopsis v10	AT5G64630.2	487	2e-98	\| Symbols: FAS2, NFB01, NFB1, MUB3.9 \| Transducin/WD40 repeat-like superfamily protein \| chr5:25833298-25836158 FORWARD LENGTH=487