barSeed - Barley Seed Development Database

Probe CUST_21645_PI390587928

Source Contig U35_28581

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_21645_PI390587928	Hv_44K_v2	TTAGATGGTGAGAGGAAGTCATTGGCATTGCAGTTGGAATCAAAGTCAGCAGAAGTTGAG	591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5253.2	3741	2e-24	2215 - 2274	100	60 / 60	plus	None
MLOC	MLOC_5253.1	3544	2e-24	1989 - 2048	100	60 / 60	plus	None
JLOC1	JLOC1_3373.2	3528	8e-25	1896 - 1955	100	60 / 60	plus
JLOC1	JLOC1_3373.1	3565	8e-25	1933 - 1992	100	60 / 60	plus
Harvest21	ABC27546	654	3e-25	592 - 651	100	60 / 60	plus
Harvest35	U35_28581	654	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_28581 654 Hv_44K_v2
GCGTAGGTTGCGCCATGTGACACGTAGAACCTCCTTAGCCATGATTCTTCTAGGCCTGTT
CCAAACAATGCCTGCATGGAATCTCTGACTGACAGCCAGTCTGATAGTGGGGAGCATATG
CTAGCTGTTGACAGTGATATAAAAAATTCTGATATGTGGGCCTCAGCTCTGATAGCAGAA
CTCGATCAATTCAAAACCGGCAATGAGGGCACAAGAGAACTTGTAAACAATACTGTTGAG
ATTGACCTAATGGATGATTTTCTTGAGATGGAAAAGCTGGCCGCATTGCCTGAAGGAGAT
CACACGAGCTCTAGCTTTGGAACAGAAACTGATTCTGACCGGGCTGTGACCAGAGATATC
TCAAGAGGTGAAACTGAAGCCCTACAGCACCAGGTTATGGATTTGCAAGCAAAGGTTGAA
AGGATTGAACATGATAAAAAAGAGCTTGAAATGGCCCTTGCAGAGGCTAGAAATCAGCTT
GACACGTCATGTGACACTCTCATGGCAGCTAACAGTAAGCTGGTTGACCTGCAGATGCAG
TTGAACTTGGCAAACGAGTCCAAAGATGCTGCTTTAGGACAAGCTGAACAGTTAGATGGT
GAGAGGAAGTCATTGGCATTGCAGTTGGAATCAAAGTCAGCAGAAGTTGAGAAG

Homology of Contig U35_28581 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g06910.3	822	6e-91	protein\|myosin heavy chain-related, putative, expressed
Brachypodium v1_2	Bradi4g24310.1	880	4e-103
Arabidopsis v10	None